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The map label for this gene is ycdB [H]

Identifier: 77459099

GI number: 77459099

Start: 3315511

End: 3316809

Strand: Direct

Name: ycdB [H]

Synonym: Pfl01_2874

Alternate gene names: 77459099

Gene position: 3315511-3316809 (Clockwise)

Preceding gene: 77459098

Following gene: 77459100

Centisome position: 51.5

GC content: 63.97

Gene sequence:

>1299_bases
ATGAACGATTCCGAACACTTCAACCTGCAACGTCGCCGCGTACTGATGGGCATGGGCGCCGCCGGTGTCGCACTGGCCGG
CACCGCTTTGAGTTGCCCGGCGATGGCCGCCGCGCCTGCGCAAGTGACCGAAGCGCCGAGCAGCGACAAGACCCAGGATC
ACCACGATTTCCATGGCGTGCACCAGACTGGCATCGTCACCCCGCGTCCGGCGGCCGGCATGCTGGTGTCGTTCGATGTG
CTGGCCAGCGACCGTGAAGACCTGGAGCGGCTGTTCCGCACCCTCAACGAGCGCATCGCGTTCCTGATGAAAGGCGGCCC
GGTGGCGCAGATCGATCCGAAGTTGCCGCCGCCGGATTCCGGAATCCTCGGCCCGGTGGTGACGCCGGACAACCTGACCA
TCACCGTGTCCGTCGGCGAGTCACTGTTCGACGAGCGCTTCGGTCTGGCCGCCGCCAAACCCAAGCGTCTGGTGCGCATG
GTCGGTTTCCCCAACGATGCGCTGGAAGCCGATTGCTGCCACGGCGATTTGAGCCTGCAGTTCTGTTCCAACACCGCCGA
CACCAACATCCACGCCCTGCGCGACATCGTGAAAAACCTGCCGGACCTGCTGCTGGTGCGTTGGAAACAGGAAGGCAGCG
TGCCGCCGCAAGCGCCGGCCAAACCCGGTGTGCCGGCGCAATCGGCGCGTAACTTCCTGGGTTTTCGCGACGGTTCGGCC
AACCCGGATTCCAACGACGGCAAGGCCATGGATCGCATCGTCTGGGTGCAACCGGGCAGCGACGAACCGGCCTGGGCGGC
CCACGGCAGTTATCAGGCGGTGCGAATCATCCGCAACTTCGTCGAACGCTGGGACCGCACGCCGTTGCAGGAACAGGAAA
GCATCATCGGCCGGGTGAAAACCACCGGCGCGCCGATGGGCGCCAGCCATGAAACCGAAGTCCCGGATTACAGCAAGGAC
CCGGAAGGCAAGCTGACCAAGCTCGACGCGCACATTCGCCTGGCCAATCCGCGCACCGCCGCGAGCCAGGCCAACCTGAT
CCTGCGCCGGCCGTTCAACTACTCCAACGGGGTGAACAAGAACGGCCAGCTCGACATGGGCCTGCTGTTCATCTGTTACC
AGGCCGACCTGGAAAAAGGCTTCATCACCGTGCAGACCCGCCTCAACGGCGAACCGCTAGAGGAATACCTCAAGCCGGTC
GGCGGCGGTTACTTCTTCACCCTGCCGGGTGTCACGGGCGACAAGGACTTCATCGGTCGCTCGCTGCTCAACGCTACTCA
ACCAAAAACAACTGCATAG

Upstream 100 bases:

>100_bases
GCAAGCAGATCGCCGACAAGGCCAAGGCCCTGGCCGACGCCCTCGACGCCATTGATCCCGCCCTCGGCCTCTCCGGCCTG
TAAGCAGAAGACGACTACCG

Downstream 100 bases:

>100_bases
CATTCAACAGGAGCCGCCCCCATGAAAAAGACGCCACTCGCGTTATTGCTGACCCTTGGTTTGCTCAACACCCCGCTGTC
GGCATTCGCCGCGACCGCGC

Product: Tat-translocated enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 432

Protein sequence:

>432_residues
MNDSEHFNLQRRRVLMGMGAAGVALAGTALSCPAMAAAPAQVTEAPSSDKTQDHHDFHGVHQTGIVTPRPAAGMLVSFDV
LASDREDLERLFRTLNERIAFLMKGGPVAQIDPKLPPPDSGILGPVVTPDNLTITVSVGESLFDERFGLAAAKPKRLVRM
VGFPNDALEADCCHGDLSLQFCSNTADTNIHALRDIVKNLPDLLLVRWKQEGSVPPQAPAKPGVPAQSARNFLGFRDGSA
NPDSNDGKAMDRIVWVQPGSDEPAWAAHGSYQAVRIIRNFVERWDRTPLQEQESIIGRVKTTGAPMGASHETEVPDYSKD
PEGKLTKLDAHIRLANPRTAASQANLILRRPFNYSNGVNKNGQLDMGLLFICYQADLEKGFITVQTRLNGEPLEEYLKPV
GGGYFFTLPGVTGDKDFIGRSLLNATQPKTTA

Sequences:

>Translated_432_residues
MNDSEHFNLQRRRVLMGMGAAGVALAGTALSCPAMAAAPAQVTEAPSSDKTQDHHDFHGVHQTGIVTPRPAAGMLVSFDV
LASDREDLERLFRTLNERIAFLMKGGPVAQIDPKLPPPDSGILGPVVTPDNLTITVSVGESLFDERFGLAAAKPKRLVRM
VGFPNDALEADCCHGDLSLQFCSNTADTNIHALRDIVKNLPDLLLVRWKQEGSVPPQAPAKPGVPAQSARNFLGFRDGSA
NPDSNDGKAMDRIVWVQPGSDEPAWAAHGSYQAVRIIRNFVERWDRTPLQEQESIIGRVKTTGAPMGASHETEVPDYSKD
PEGKLTKLDAHIRLANPRTAASQANLILRRPFNYSNGVNKNGQLDMGLLFICYQADLEKGFITVQTRLNGEPLEEYLKPV
GGGYFFTLPGVTGDKDFIGRSLLNATQPKTTA
>Mature_432_residues
MNDSEHFNLQRRRVLMGMGAAGVALAGTALSCPAMAAAPAQVTEAPSSDKTQDHHDFHGVHQTGIVTPRPAAGMLVSFDV
LASDREDLERLFRTLNERIAFLMKGGPVAQIDPKLPPPDSGILGPVVTPDNLTITVSVGESLFDERFGLAAAKPKRLVRM
VGFPNDALEADCCHGDLSLQFCSNTADTNIHALRDIVKNLPDLLLVRWKQEGSVPPQAPAKPGVPAQSARNFLGFRDGSA
NPDSNDGKAMDRIVWVQPGSDEPAWAAHGSYQAVRIIRNFVERWDRTPLQEQESIIGRVKTTGAPMGASHETEVPDYSKD
PEGKLTKLDAHIRLANPRTAASQANLILRRPFNYSNGVNKNGQLDMGLLFICYQADLEKGFITVQTRLNGEPLEEYLKPV
GGGYFFTLPGVTGDKDFIGRSLLNATQPKTTA

Specific function: May have a role as a peroxidase [H]

COG id: COG2837

COG function: function code P; Predicted iron-dependent peroxidase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DyP-type peroxidase family [H]

Homologues:

Organism=Escherichia coli, GI1787255, Length=417, Percent_Identity=59.7122302158273, Blast_Score=495, Evalue=1e-141,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR006314
- InterPro:   IPR006313
- InterPro:   IPR006311 [H]

Pfam domain/function: PF04261 Dyp_perox [H]

EC number: NA

Molecular weight: Translated: 46879; Mature: 46879

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDSEHFNLQRRRVLMGMGAAGVALAGTALSCPAMAAAPAQVTEAPSSDKTQDHHDFHGV
CCCCHHCCHHHHHHHHCCCCCHHHHCCCHHCCCCHHCCCCHHHCCCCCCCCCCCHHHCCH
HQTGIVTPRPAAGMLVSFDVLASDREDLERLFRTLNERIAFLMKGGPVAQIDPKLPPPDS
HHCCCCCCCCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHEEHCCCCCCEEECCCCCCCCC
GILGPVVTPDNLTITVSVGESLFDERFGLAAAKPKRLVRMVGFPNDALEADCCHGDLSLQ
CCCCCEECCCCEEEEEECCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEE
FCSNTADTNIHALRDIVKNLPDLLLVRWKQEGSVPPQAPAKPGVPAQSARNFLGFRDGSA
EECCCCCCHHHHHHHHHHHCHHHEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
NPDSNDGKAMDRIVWVQPGSDEPAWAAHGSYQAVRIIRNFVERWDRTPLQEQESIIGRVK
CCCCCCCCCEEEEEEEECCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
TTGAPMGASHETEVPDYSKDPEGKLTKLDAHIRLANPRTAASQANLILRRPFNYSNGVNK
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCHHHHCCEEEECCCCCCCCCCC
NGQLDMGLLFICYQADLEKGFITVQTRLNGEPLEEYLKPVGGGYFFTLPGVTGDKDFIGR
CCCCCCEEEEEEEECCCCCCEEEEEEECCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHH
SLLNATQPKTTA
HHHHCCCCCCCC
>Mature Secondary Structure
MNDSEHFNLQRRRVLMGMGAAGVALAGTALSCPAMAAAPAQVTEAPSSDKTQDHHDFHGV
CCCCHHCCHHHHHHHHCCCCCHHHHCCCHHCCCCHHCCCCHHHCCCCCCCCCCCHHHCCH
HQTGIVTPRPAAGMLVSFDVLASDREDLERLFRTLNERIAFLMKGGPVAQIDPKLPPPDS
HHCCCCCCCCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHEEHCCCCCCEEECCCCCCCCC
GILGPVVTPDNLTITVSVGESLFDERFGLAAAKPKRLVRMVGFPNDALEADCCHGDLSLQ
CCCCCEECCCCEEEEEECCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEE
FCSNTADTNIHALRDIVKNLPDLLLVRWKQEGSVPPQAPAKPGVPAQSARNFLGFRDGSA
EECCCCCCHHHHHHHHHHHCHHHEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
NPDSNDGKAMDRIVWVQPGSDEPAWAAHGSYQAVRIIRNFVERWDRTPLQEQESIIGRVK
CCCCCCCCCEEEEEEEECCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
TTGAPMGASHETEVPDYSKDPEGKLTKLDAHIRLANPRTAASQANLILRRPFNYSNGVNK
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCHHHHCCEEEECCCCCCCCCCC
NGQLDMGLLFICYQADLEKGFITVQTRLNGEPLEEYLKPVGGGYFFTLPGVTGDKDFIGR
CCCCCCEEEEEEEECCCCCCEEEEEEECCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHH
SLLNATQPKTTA
HHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]