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The map label for this gene is yjdC [H]

Identifier: 77459102

GI number: 77459102

Start: 3319279

End: 3319845

Strand: Direct

Name: yjdC [H]

Synonym: Pfl01_2877

Alternate gene names: 77459102

Gene position: 3319279-3319845 (Clockwise)

Preceding gene: 77459100

Following gene: 77459103

Centisome position: 51.55

GC content: 56.97

Gene sequence:

>567_bases
ATGAACGAAATCACACGCAACGACACAACCCGAGACATCATTCTGGATGTCACCGAAAAGTTGATCTACAAAAGTGGCAT
CGCGGCCACCGGCATGGATCTTCTGGTGAAAACCGCCGGCGTTTCCAGAAAGAGTATCTACCGCTACTTCGCCAACAAGG
AGGAGCTGACCGTCGCCGCCCTGCAACGCCGCGACGTGCGTTGGATGCACTGGTACAGAAGCACCGTCGATCAGGCCGAA
ACCCCGGCCGACCGCCTGCTCAACCTGTTTACCGTGCTCAAGGGCTGGTTCGCCTCGGAAGGCTTTCGGGGCTGTGCCTT
CATCAATACCAGTGGCGAAACCGGTGATCCCGAGGATCCGGTCCGCCTGGTCGCCAAAGACCACAAACAGAAACTGCTCG
ACTACCTGTGCGAGCTGTGTACCGAACATGGTGCCGAGGATCCGCAACTGCTGGCCAAACAGCTGCTGATCCTGATTGAC
GGCGCCATTACCGTAGCGCTTGTGATGGGTGATCACAGTGCCGCCGATAATGCGCAATGCATGGCGCGAAAGTTATTGGA
CCTGTAA

Upstream 100 bases:

>100_bases
TGCATTTTCCTGTGGGAGCCAGCCTGCTGGCGATCGCTAACTTCCAGATGAACAAAATATCTGCTTGACCAAGGAGAACG
ATCGTTCTACTGTTCACCAC

Downstream 100 bases:

>100_bases
CGCCTTAATAAGCCTGACACGTTGTTTAACTGTTAATAGATCGGGAGACAAACATGTCTACTGCAGCCGAAGTTCGTCCG
CCATTGCCGCCGTTCAACCG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MNEITRNDTTRDIILDVTEKLIYKSGIAATGMDLLVKTAGVSRKSIYRYFANKEELTVAALQRRDVRWMHWYRSTVDQAE
TPADRLLNLFTVLKGWFASEGFRGCAFINTSGETGDPEDPVRLVAKDHKQKLLDYLCELCTEHGAEDPQLLAKQLLILID
GAITVALVMGDHSAADNAQCMARKLLDL

Sequences:

>Translated_188_residues
MNEITRNDTTRDIILDVTEKLIYKSGIAATGMDLLVKTAGVSRKSIYRYFANKEELTVAALQRRDVRWMHWYRSTVDQAE
TPADRLLNLFTVLKGWFASEGFRGCAFINTSGETGDPEDPVRLVAKDHKQKLLDYLCELCTEHGAEDPQLLAKQLLILID
GAITVALVMGDHSAADNAQCMARKLLDL
>Mature_188_residues
MNEITRNDTTRDIILDVTEKLIYKSGIAATGMDLLVKTAGVSRKSIYRYFANKEELTVAALQRRDVRWMHWYRSTVDQAE
TPADRLLNLFTVLKGWFASEGFRGCAFINTSGETGDPEDPVRLVAKDHKQKLLDYLCELCTEHGAEDPQLLAKQLLILID
GAITVALVMGDHSAADNAQCMARKLLDL

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082374, Length=177, Percent_Identity=25.4237288135593, Blast_Score=68, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21074; Mature: 21074

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEITRNDTTRDIILDVTEKLIYKSGIAATGMDLLVKTAGVSRKSIYRYFANKEELTVAA
CCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
LQRRDVRWMHWYRSTVDQAETPADRLLNLFTVLKGWFASEGFRGCAFINTSGETGDPEDP
HHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHH
VRLVAKDHKQKLLDYLCELCTEHGAEDPQLLAKQLLILIDGAITVALVMGDHSAADNAQC
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHH
MARKLLDL
HHHHHHCC
>Mature Secondary Structure
MNEITRNDTTRDIILDVTEKLIYKSGIAATGMDLLVKTAGVSRKSIYRYFANKEELTVAA
CCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
LQRRDVRWMHWYRSTVDQAETPADRLLNLFTVLKGWFASEGFRGCAFINTSGETGDPEDP
HHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHH
VRLVAKDHKQKLLDYLCELCTEHGAEDPQLLAKQLLILIDGAITVALVMGDHSAADNAQC
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHH
MARKLLDL
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]