| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is hyi [H]
Identifier: 77457824
GI number: 77457824
Start: 1784072
End: 1784854
Strand: Reverse
Name: hyi [H]
Synonym: Pfl01_1597
Alternate gene names: 77457824
Gene position: 1784854-1784072 (Counterclockwise)
Preceding gene: 77457825
Following gene: 77457823
Centisome position: 27.72
GC content: 61.56
Gene sequence:
>783_bases ATGCCGCGTTTCGCAGCCAACCTGTCCATGCTGTTCACCGAACAGGATTTCCTTGCCCGTTTCGACGCCGCCGCCAAGGC TGGCTTCAGCGGTGTCGAGTACCTGTTCCCGTACGATTTCAGCTCCGCCGAAATCAAGGCCAGACTCGACGCCAACGGTC TGACCCAAGTGCTGTTCAACCTGCCGGCCGGTGACTGGGCCAAGGGCGAGCGCGGTATCGCGTGCCTGCCGGACCGGGTC GAAGAGTTCCGCGCCGGGGTCGATCTGGCCATCGCTTACGCACAGGTGCTGGGCAACACCCAGGTCAACTGCCTGGCCGG TATCCGTCCGCAGGGCGTGGACGATGCCACCGTTGAAAAGACCTTCGTCGCCAACCTCAAGTACGCCGCCGACAAGCTGC AAGCCGTCGGCATCAAACTGGTGATGGAAGCGATCAACACCCGCGACATCCCGGGTTTCTACCTGAACAACACGGCGCAA GCCCTGTCGATTCGCGAGCAGGTCGGCAGCGCCAATCTGTTCCTGCAATACGACATCTATCACATGCAAATCATGGAAGG CGATCTGGCCCGCACCCTGCAATCGCACCTGGCCGAGATCAACCATGTGCAGCTCGCCGACAACCCGGGCCGCAACGAGC CGGGCACTGGCGAAATCAACTACCGCTTCCTGTTCGAACACCTCGATCGCATCGGTTATCAGGGCTGGGTCGGCTGCGAG TACAAACCGCTGACCACCACTGAAGCGGGCCTCGGCTGGCTGAAGACCCACAACGCGATCTGA
Upstream 100 bases:
>100_bases TTGCTCGACTGAACGTAACCGGCTCCCTCTCCCTCCGGGAGAGGGGACTTGATCGCGTTCAGTCTGACCAACCGTGTCAA AACTGTTTTAGGAGACCACC
Downstream 100 bases:
>100_bases CCCCTATTTGCTTGAGCAAGACAAAAACAAGAGGAATTTCTCATGGCTAAAATCGGATTTATCGGCACCGGCATCATGGG CCACCCAATGGCGGCGAACC
Product: hydroxypyruvate isomerase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MPRFAANLSMLFTEQDFLARFDAAAKAGFSGVEYLFPYDFSSAEIKARLDANGLTQVLFNLPAGDWAKGERGIACLPDRV EEFRAGVDLAIAYAQVLGNTQVNCLAGIRPQGVDDATVEKTFVANLKYAADKLQAVGIKLVMEAINTRDIPGFYLNNTAQ ALSIREQVGSANLFLQYDIYHMQIMEGDLARTLQSHLAEINHVQLADNPGRNEPGTGEINYRFLFEHLDRIGYQGWVGCE YKPLTTTEAGLGWLKTHNAI
Sequences:
>Translated_260_residues MPRFAANLSMLFTEQDFLARFDAAAKAGFSGVEYLFPYDFSSAEIKARLDANGLTQVLFNLPAGDWAKGERGIACLPDRV EEFRAGVDLAIAYAQVLGNTQVNCLAGIRPQGVDDATVEKTFVANLKYAADKLQAVGIKLVMEAINTRDIPGFYLNNTAQ ALSIREQVGSANLFLQYDIYHMQIMEGDLARTLQSHLAEINHVQLADNPGRNEPGTGEINYRFLFEHLDRIGYQGWVGCE YKPLTTTEAGLGWLKTHNAI >Mature_259_residues PRFAANLSMLFTEQDFLARFDAAAKAGFSGVEYLFPYDFSSAEIKARLDANGLTQVLFNLPAGDWAKGERGIACLPDRVE EFRAGVDLAIAYAQVLGNTQVNCLAGIRPQGVDDATVEKTFVANLKYAADKLQAVGIKLVMEAINTRDIPGFYLNNTAQA LSIREQVGSANLFLQYDIYHMQIMEGDLARTLQSHLAEINHVQLADNPGRNEPGTGEINYRFLFEHLDRIGYQGWVGCEY KPLTTTEAGLGWLKTHNAI
Specific function: Catalyzes the reversible isomerization between hydroxypyruvate and 2-hydroxy-3-oxopropanoate (also termed tartronate semialdehyde) [H]
COG id: COG3622
COG function: function code G; Hydroxypyruvate isomerase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the hyi family [H]
Homologues:
Organism=Homo sapiens, GI300068962, Length=262, Percent_Identity=41.9847328244275, Blast_Score=197, Evalue=6e-51, Organism=Homo sapiens, GI300068964, Length=243, Percent_Identity=41.5637860082305, Blast_Score=176, Evalue=3e-44, Organism=Escherichia coli, GI1786718, Length=254, Percent_Identity=57.8740157480315, Blast_Score=305, Evalue=1e-84, Organism=Escherichia coli, GI1789095, Length=254, Percent_Identity=46.0629921259843, Blast_Score=242, Evalue=2e-65, Organism=Caenorhabditis elegans, GI17552022, Length=240, Percent_Identity=36.6666666666667, Blast_Score=159, Evalue=1e-39, Organism=Drosophila melanogaster, GI17530883, Length=256, Percent_Identity=36.71875, Blast_Score=164, Evalue=4e-41,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017643 - InterPro: IPR013022 - InterPro: IPR012307 [H]
Pfam domain/function: PF01261 AP_endonuc_2 [H]
EC number: =5.3.1.22 [H]
Molecular weight: Translated: 28742; Mature: 28611
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRFAANLSMLFTEQDFLARFDAAAKAGFSGVEYLFPYDFSSAEIKARLDANGLTQVLFN CCCHHCCEEEEEECHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEECCCHHHHHHHC LPAGDWAKGERGIACLPDRVEEFRAGVDLAIAYAQVLGNTQVNCLAGIRPQGVDDATVEK CCCCCCCCCCCCCEECHHHHHHHHCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHH TFVANLKYAADKLQAVGIKLVMEAINTRDIPGFYLNNTAQALSIREQVGSANLFLQYDIY HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHCCCEEEEEEEEE HMQIMEGDLARTLQSHLAEINHVQLADNPGRNEPGTGEINYRFLFEHLDRIGYQGWVGCE EEEECCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEHHHHHHHHHHCCCCCEECCC YKPLTTTEAGLGWLKTHNAI CCCCCCCCCCCCCHHCCCCC >Mature Secondary Structure PRFAANLSMLFTEQDFLARFDAAAKAGFSGVEYLFPYDFSSAEIKARLDANGLTQVLFN CCHHCCEEEEEECHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEECCCHHHHHHHC LPAGDWAKGERGIACLPDRVEEFRAGVDLAIAYAQVLGNTQVNCLAGIRPQGVDDATVEK CCCCCCCCCCCCCEECHHHHHHHHCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHH TFVANLKYAADKLQAVGIKLVMEAINTRDIPGFYLNNTAQALSIREQVGSANLFLQYDIY HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHCCCEEEEEEEEE HMQIMEGDLARTLQSHLAEINHVQLADNPGRNEPGTGEINYRFLFEHLDRIGYQGWVGCE EEEECCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEHHHHHHHHHHCCCCCEECCC YKPLTTTEAGLGWLKTHNAI CCCCCCCCCCCCCHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8440684; 10561547; 9278503 [H]