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The map label for this gene is yciO [H]

Identifier: 77457715

GI number: 77457715

Start: 1667003

End: 1667632

Strand: Direct

Name: yciO [H]

Synonym: Pfl01_1488

Alternate gene names: 77457715

Gene position: 1667003-1667632 (Clockwise)

Preceding gene: 77457714

Following gene: 77457716

Centisome position: 25.89

GC content: 61.11

Gene sequence:

>630_bases
GTGAGTCAATTTTTCCAGATTCATCCGGAAAACCCGCAAGCGCGCCTGATCAAACAGGCCGTCGAGATCATCCGCAAGGG
CGGAGTTGTGGTCTATCCCACCGACTCTTCCTACGCAATCGGTTGCCAGATCGGTGACAAGAACGCCATCGAGCGCGTTC
GTCGCCTGCGTCAACTCGACGAAAAGCACAACTTCGCGCTGATCTGCAGCGACCTGTCGCAACTGGGCAATTACGCCAAG
ATCGACACCGCGACCTTTCGAATCCTCAAAGCCCACTTGCCGGGCCCGTACACCTTCATTCTCAACGCCACCCGCGAAGT
ACCGCGGCTGCTGCTGCATCCGAAGAAGCGCACCATCGGTCTGCGGGTGCCGAGCCATCCCATCGCGCTGGCGCTGCTGG
CCGAACTGGGCGAGCCGCTGATGAGCGTGACCCTGATCATGCCGGGCGATGAAGACCCGTTGAGCGATCCGTACGAAATG
CGCCAGGTGCTCGAGCATCAGGTGGACCTGATCATCGACGGCGGATCCGGCGGCATCAAGGCCTCCACCGTGATCGACCT
GACCGGCGATGATCCGGAAGTGATCCGCGTCGGTTGCGGCGACCCGGCTCCATTCATGGTCGAGGCCTGA

Upstream 100 bases:

>100_bases
GAGATCGGCCAGTACCGGCCGGTGCCGGAGGACCTTCCACCCCTGTGGTGTCGGTTCAAACATGACCCAGTTATTGCCGC
CGTCTGAACAGGTAGAGAAT

Downstream 100 bases:

>100_bases
ATGTCCGCAGTGGAAACCGTTGATCCCCAGGCCGGTGCCCAGCAGGAACTGCCGTTTGCCATGGTCTATGGCCAGGCCGT
CACGGAAATGCCGCTGGACC

Product: translation factor SUA5

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MSQFFQIHPENPQARLIKQAVEIIRKGGVVVYPTDSSYAIGCQIGDKNAIERVRRLRQLDEKHNFALICSDLSQLGNYAK
IDTATFRILKAHLPGPYTFILNATREVPRLLLHPKKRTIGLRVPSHPIALALLAELGEPLMSVTLIMPGDEDPLSDPYEM
RQVLEHQVDLIIDGGSGGIKASTVIDLTGDDPEVIRVGCGDPAPFMVEA

Sequences:

>Translated_209_residues
MSQFFQIHPENPQARLIKQAVEIIRKGGVVVYPTDSSYAIGCQIGDKNAIERVRRLRQLDEKHNFALICSDLSQLGNYAK
IDTATFRILKAHLPGPYTFILNATREVPRLLLHPKKRTIGLRVPSHPIALALLAELGEPLMSVTLIMPGDEDPLSDPYEM
RQVLEHQVDLIIDGGSGGIKASTVIDLTGDDPEVIRVGCGDPAPFMVEA
>Mature_208_residues
SQFFQIHPENPQARLIKQAVEIIRKGGVVVYPTDSSYAIGCQIGDKNAIERVRRLRQLDEKHNFALICSDLSQLGNYAKI
DTATFRILKAHLPGPYTFILNATREVPRLLLHPKKRTIGLRVPSHPIALALLAELGEPLMSVTLIMPGDEDPLSDPYEMR
QVLEHQVDLIIDGGSGGIKASTVIDLTGDDPEVIRVGCGDPAPFMVEA

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=206, Percent_Identity=61.6504854368932, Blast_Score=266, Evalue=7e-73,
Organism=Escherichia coli, GI2367210, Length=143, Percent_Identity=27.2727272727273, Blast_Score=68, Evalue=3e-13,
Organism=Drosophila melanogaster, GI78707274, Length=188, Percent_Identity=26.063829787234, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 23028; Mature: 22897

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQFFQIHPENPQARLIKQAVEIIRKGGVVVYPTDSSYAIGCQIGDKNAIERVRRLRQLD
CCCCEEECCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEEECCHHHHHHHHHHHHHH
EKHNFALICSDLSQLGNYAKIDTATFRILKAHLPGPYTFILNATREVPRLLLHPKKRTIG
HHCCEEEEEHHHHHCCCEEEEHHHHHEEEHHCCCCCEEEEEECCHHHHHHHCCCCCCEEE
LRVPSHPIALALLAELGEPLMSVTLIMPGDEDPLSDPYEMRQVLEHQVDLIIDGGSGGIK
EECCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCEEEEEECCCCCEE
ASTVIDLTGDDPEVIRVGCGDPAPFMVEA
EEEEEEECCCCCEEEEECCCCCCCEEEEC
>Mature Secondary Structure 
SQFFQIHPENPQARLIKQAVEIIRKGGVVVYPTDSSYAIGCQIGDKNAIERVRRLRQLD
CCCEEECCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEEECCHHHHHHHHHHHHHH
EKHNFALICSDLSQLGNYAKIDTATFRILKAHLPGPYTFILNATREVPRLLLHPKKRTIG
HHCCEEEEEHHHHHCCCEEEEHHHHHEEEHHCCCCCEEEEEECCHHHHHHHCCCCCCEEE
LRVPSHPIALALLAELGEPLMSVTLIMPGDEDPLSDPYEMRQVLEHQVDLIIDGGSGGIK
EECCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCEEEEEECCCCCEE
ASTVIDLTGDDPEVIRVGCGDPAPFMVEA
EEEEEEECCCCCEEEEECCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]