| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is trpH [H]
Identifier: 77457714
GI number: 77457714
Start: 1666126
End: 1666989
Strand: Direct
Name: trpH [H]
Synonym: Pfl01_1487
Alternate gene names: 77457714
Gene position: 1666126-1666989 (Clockwise)
Preceding gene: 77457707
Following gene: 77457715
Centisome position: 25.88
GC content: 64.58
Gene sequence:
>864_bases GTGAATGTCGATTTGCACTGCCACAGCACGGCCTCCGATGGCGCCCTGGCGCCTGCGGCACTGGTTGCGCGTGCGTTCGA GAACGGCGTGCGAGTCCTGTCCCTGACCGATCATGACACCCTCGAAGGCCTTGCCGAAGCGCGCACGGCCGCCGAGGCGC TGGGCATGCAACTGGTCAACGGCGTCGAATTGTCCTGCACTTGGGGCGGGGCGACCATTCACGTGCTCGGTTACGGTTTC GACGTCAACGCCGCGCCGTTGGTCGAGGCGATCGCCAATCTGCACGATGGTCGCTGGCTGCGGTCTGAGGAAATAAGCCG CAAGCTCGCCCTCAAGGGTATGCCGAATGCCCTCGACGGCGCGCGGCAGATCCAGCAGGAGCTGGGCGACAGCGGCAACG CGCCGGCCCGCCCGCATTTCGCCGACTGGATGGTGCGTGAAGGTTTTGTAAAGGATCGCGCCGAAGCGTTTCGCAAATGG CTCGGCGCCGGCAAGCTGGGAGACGTCAAGCAGCACTGGCCGACCCTGGAAGACACCGTCGGCACGCTGCGCGCCGCCGG CGCATGGGTCAGCCTGGCGCATCCATGGCACTACGATTTCACCCGCAGCAAGCGCCGAAAGCTGATTGCCGACTATATTC AAGCGGGCGGGCAGGCGATCGAAGTGGTCAATGGTCATCAACCTGCGGAACAGGTGGGCAGCCTGGCAATCCTTGCCCGA GAGTTCGGTCTGCTGGTCAGCGCCGGCAGTGATTTCCATGGCCCTGGTGGCTGGTCCGAGATCGGCCAGTACCGGCCGGT GCCGGAGGACCTTCCACCCCTGTGGTGTCGGTTCAAACATGACCCAGTTATTGCCGCCGTCTGA
Upstream 100 bases:
>100_bases TGAATTGTTTCACAGTGAGAGCCAGAAGCTGGATGTGGCGGCATAATAACAAACATATGGGCGCGCGATAGCGCCAGCTG ATTTGAGGTTACACATCCCC
Downstream 100 bases:
>100_bases ACAGGTAGAGAATGTGAGTCAATTTTTCCAGATTCATCCGGAAAACCCGCAAGCGCGCCTGATCAAACAGGCCGTCGAGA TCATCCGCAAGGGCGGAGTT
Product: PHP-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 287; Mature: 287
Protein sequence:
>287_residues MNVDLHCHSTASDGALAPAALVARAFENGVRVLSLTDHDTLEGLAEARTAAEALGMQLVNGVELSCTWGGATIHVLGYGF DVNAAPLVEAIANLHDGRWLRSEEISRKLALKGMPNALDGARQIQQELGDSGNAPARPHFADWMVREGFVKDRAEAFRKW LGAGKLGDVKQHWPTLEDTVGTLRAAGAWVSLAHPWHYDFTRSKRRKLIADYIQAGGQAIEVVNGHQPAEQVGSLAILAR EFGLLVSAGSDFHGPGGWSEIGQYRPVPEDLPPLWCRFKHDPVIAAV
Sequences:
>Translated_287_residues MNVDLHCHSTASDGALAPAALVARAFENGVRVLSLTDHDTLEGLAEARTAAEALGMQLVNGVELSCTWGGATIHVLGYGF DVNAAPLVEAIANLHDGRWLRSEEISRKLALKGMPNALDGARQIQQELGDSGNAPARPHFADWMVREGFVKDRAEAFRKW LGAGKLGDVKQHWPTLEDTVGTLRAAGAWVSLAHPWHYDFTRSKRRKLIADYIQAGGQAIEVVNGHQPAEQVGSLAILAR EFGLLVSAGSDFHGPGGWSEIGQYRPVPEDLPPLWCRFKHDPVIAAV >Mature_287_residues MNVDLHCHSTASDGALAPAALVARAFENGVRVLSLTDHDTLEGLAEARTAAEALGMQLVNGVELSCTWGGATIHVLGYGF DVNAAPLVEAIANLHDGRWLRSEEISRKLALKGMPNALDGARQIQQELGDSGNAPARPHFADWMVREGFVKDRAEAFRKW LGAGKLGDVKQHWPTLEDTVGTLRAAGAWVSLAHPWHYDFTRSKRRKLIADYIQAGGQAIEVVNGHQPAEQVGSLAILAR EFGLLVSAGSDFHGPGGWSEIGQYRPVPEDLPPLWCRFKHDPVIAAV
Specific function: Unknown
COG id: COG0613
COG function: function code R; Predicted metal-dependent phosphoesterases (PHP family)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trpH family [H]
Homologues:
Organism=Escherichia coli, GI1787520, Length=274, Percent_Identity=36.4963503649635, Blast_Score=173, Evalue=1e-44,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004013 - InterPro: IPR003141 - InterPro: IPR016195 [H]
Pfam domain/function: PF02811 PHP [H]
EC number: NA
Molecular weight: Translated: 31056; Mature: 31056
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVDLHCHSTASDGALAPAALVARAFENGVRVLSLTDHDTLEGLAEARTAAEALGMQLVN CCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHC GVELSCTWGGATIHVLGYGFDVNAAPLVEAIANLHDGRWLRSEEISRKLALKGMPNALDG CEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHH ARQIQQELGDSGNAPARPHFADWMVREGFVKDRAEAFRKWLGAGKLGDVKQHWPTLEDTV HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHH GTLRAAGAWVSLAHPWHYDFTRSKRRKLIADYIQAGGQAIEVVNGHQPAEQVGSLAILAR HHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH EFGLLVSAGSDFHGPGGWSEIGQYRPVPEDLPPLWCRFKHDPVIAAV HHHHEEECCCCCCCCCCHHHHHCCCCCCCCCCCHHEEECCCCEEEEC >Mature Secondary Structure MNVDLHCHSTASDGALAPAALVARAFENGVRVLSLTDHDTLEGLAEARTAAEALGMQLVN CCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHC GVELSCTWGGATIHVLGYGFDVNAAPLVEAIANLHDGRWLRSEEISRKLALKGMPNALDG CEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHH ARQIQQELGDSGNAPARPHFADWMVREGFVKDRAEAFRKWLGAGKLGDVKQHWPTLEDTV HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHH GTLRAAGAWVSLAHPWHYDFTRSKRRKLIADYIQAGGQAIEVVNGHQPAEQVGSLAILAR HHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH EFGLLVSAGSDFHGPGGWSEIGQYRPVPEDLPPLWCRFKHDPVIAAV HHHHEEECCCCCCCCCCHHHHHCCCCCCCCCCCHHEEECCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]