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The map label for this gene is rcsF [H]

Identifier: 77457413

GI number: 77457413

Start: 1354131

End: 1354838

Strand: Reverse

Name: rcsF [H]

Synonym: Pfl01_1186

Alternate gene names: 77457413

Gene position: 1354838-1354131 (Counterclockwise)

Preceding gene: 77457414

Following gene: 77457411

Centisome position: 21.04

GC content: 65.54

Gene sequence:

>708_bases
ATGCAAACCATGACTTACAGCGTCTCCCCCATCGGCTTCGTCCGCTCCTGCTTCAAGGAGAAGTTCGCCATCCCGCGCCA
GCCGCAACTGGCCCCCGCCGCCCGTGGCGTGCTGGAGCTGGTGGCGCCGTTCGATCAGGGCGATGCGGTGCAGGGGCTGG
AGCAGGTCAGTCATGTCTGGCTGCTGTTCCTGTTCCATCAGGCGCTGGAAGACAAGCCGCGCCTCAAGGTCCGCCCTCCG
CGCCTCGGTGGCAACAAATCCATGGGCGTGTTCGCCACCCGCGCCACGCACCGGCCGAACGGCATCGGTCAGTCGGTGGT
GAAGCTGGACAAGGTCGAGGCCAATCGCCTGCTCATCTCCGGTATCGACCTGCTGGACGGCACGCCGATTCTCGACATCA
AACCCTACGTGCCCTACGCCGACATCATCACTGACGCTTCCAACAGCATCGCCAGTGCCGCGCCGCACCTGATCGACGTG
CAGTGGACGGACGCGGCGCTGCAACAGGCGCAGACGCACGCTCAGCGCCTGGCCGAGCCGCTGGTCGAGCTGATCGAGCA
ATGCCTGGCCCAGGATCCGCGCCCGGCGTATCAGACGCCAATGCCAGAGCGCGAATACGGCGCGCAGTTCTGGGATCTGG
ATGTGCGCTGGCATTACCCGACGCCCGAACAGATCCGCGTCCTGGAAGTCATCCCCGCCGCTGACTGA

Upstream 100 bases:

>100_bases
CGTACATGACCGGGAATATCATTCCGCTGGATGGCGGGTTCAGTCTTTAGATCGGCGACGCGGCCGGACGGGTTATCATG
CCCGCCCTGCTCCGCTTCGA

Downstream 100 bases:

>100_bases
ACCCCGAAAACGAAAATGCCCGCGCTGCCTTCTCAGGCAACGCGGGCTTTTCTATCGGCATCGTCGGGATTATTTCTCGA
CGAATGCGCGCTCGATCAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MQTMTYSVSPIGFVRSCFKEKFAIPRQPQLAPAARGVLELVAPFDQGDAVQGLEQVSHVWLLFLFHQALEDKPRLKVRPP
RLGGNKSMGVFATRATHRPNGIGQSVVKLDKVEANRLLISGIDLLDGTPILDIKPYVPYADIITDASNSIASAAPHLIDV
QWTDAALQQAQTHAQRLAEPLVELIEQCLAQDPRPAYQTPMPEREYGAQFWDLDVRWHYPTPEQIRVLEVIPAAD

Sequences:

>Translated_235_residues
MQTMTYSVSPIGFVRSCFKEKFAIPRQPQLAPAARGVLELVAPFDQGDAVQGLEQVSHVWLLFLFHQALEDKPRLKVRPP
RLGGNKSMGVFATRATHRPNGIGQSVVKLDKVEANRLLISGIDLLDGTPILDIKPYVPYADIITDASNSIASAAPHLIDV
QWTDAALQQAQTHAQRLAEPLVELIEQCLAQDPRPAYQTPMPEREYGAQFWDLDVRWHYPTPEQIRVLEVIPAAD
>Mature_235_residues
MQTMTYSVSPIGFVRSCFKEKFAIPRQPQLAPAARGVLELVAPFDQGDAVQGLEQVSHVWLLFLFHQALEDKPRLKVRPP
RLGGNKSMGVFATRATHRPNGIGQSVVKLDKVEANRLLISGIDLLDGTPILDIKPYVPYADIITDASNSIASAAPHLIDV
QWTDAALQQAQTHAQRLAEPLVELIEQCLAQDPRPAYQTPMPEREYGAQFWDLDVRWHYPTPEQIRVLEVIPAAD

Specific function: Unknown

COG id: COG1720

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0066 (virR) family [H]

Homologues:

Organism=Homo sapiens, GI118600979, Length=143, Percent_Identity=44.7552447552448, Blast_Score=134, Evalue=1e-31,
Organism=Escherichia coli, GI1786393, Length=219, Percent_Identity=47.945205479452, Blast_Score=199, Evalue=1e-52,
Organism=Drosophila melanogaster, GI45552503, Length=159, Percent_Identity=40.8805031446541, Blast_Score=124, Evalue=5e-29,
Organism=Drosophila melanogaster, GI24586408, Length=134, Percent_Identity=44.7761194029851, Blast_Score=122, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001378 [H]

Pfam domain/function: PF01980 UPF0066 [H]

EC number: NA

Molecular weight: Translated: 26191; Mature: 26191

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: PS01318 UPF0066

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTMTYSVSPIGFVRSCFKEKFAIPRQPQLAPAARGVLELVAPFDQGDAVQGLEQVSHVW
CCCEEECCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LLFLFHQALEDKPRLKVRPPRLGGNKSMGVFATRATHRPNGIGQSVVKLDKVEANRLLIS
HHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCEEEEE
GIDLLDGTPILDIKPYVPYADIITDASNSIASAAPHLIDVQWTDAALQQAQTHAQRLAEP
CCHHHCCCCEEECCCCCCHHHHHHCCCCHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHH
LVELIEQCLAQDPRPAYQTPMPEREYGAQFWDLDVRWHYPTPEQIRVLEVIPAAD
HHHHHHHHHCCCCCCCCCCCCCCHHHCCEEEEEEEEECCCCCHHEEEEEEECCCC
>Mature Secondary Structure
MQTMTYSVSPIGFVRSCFKEKFAIPRQPQLAPAARGVLELVAPFDQGDAVQGLEQVSHVW
CCCEEECCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LLFLFHQALEDKPRLKVRPPRLGGNKSMGVFATRATHRPNGIGQSVVKLDKVEANRLLIS
HHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCEEEEE
GIDLLDGTPILDIKPYVPYADIITDASNSIASAAPHLIDVQWTDAALQQAQTHAQRLAEP
CCHHHCCCCEEECCCCCCHHHHHHCCCCHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHH
LVELIEQCLAQDPRPAYQTPMPEREYGAQFWDLDVRWHYPTPEQIRVLEVIPAAD
HHHHHHHHHCCCCCCCCCCCCCCHHHCCEEEEEEEEECCCCCHHEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]