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The map label for this gene is arpC [H]

Identifier: 77456372

GI number: 77456372

Start: 173582

End: 175033

Strand: Direct

Name: arpC [H]

Synonym: Pfl01_0144

Alternate gene names: 77456372

Gene position: 173582-175033 (Clockwise)

Preceding gene: 77456371

Following gene: 77456373

Centisome position: 2.7

GC content: 65.84

Gene sequence:

>1452_bases
ATGAAGCGCTTTCAGTCCCTGACAGTGGTCCTGAGTCTGTCGGCATTGGCGGCCTGCACCGTCGGCCCGGACTTCCAGAA
ACCCCAAGCCACGCAGATTGCCGAGTGGGCAAAGCCCTCAAAAACCGCCGTCAGCCAGGCCGTCAGCGAACCCTTGAACG
AGCGCTGGTGGGAAGTCTTTCACGACGCGCAACTCTCGGCCCTGACCCAGCGCGCCTTGCGCAGCAACCTTGACCTGCAA
CTGGCCAGCAGCCGCCTGCAACAAAGCCGCGCCGCCCGCCAGGTGATCACCGCCGACCGTTATCCAACGACCGCCGCCAC
CGGCAGCTATGCCCGCAAACGCAACAGCGGCGAAGGCCTGAACGACCCGTCCGGACACAATGGCGATTCGGCCTTCAACC
TGTGGGATGCCGGTTTCTCGGCCTCCTGGGAGCTGGATTTCTGGGGCCGCGTGCGCCGGGAGACCGAAGCCGCCGATGCC
AACCTCGAAGTCGCGGAAAACGACCGTCGCGGCGTGCTGTTGGCGGTACTCGCGGACACCGCGCAGAACTACATCCAGCT
GCGCGGCGTACAGAACACCCGCGCGGTCACCGAGCAGAACCTCGATGTGGCGCGACACAGCCTGAAGCTTTCACAACTGC
GCCTCAACGACGGTGTGGCCACCGATCTCGACGTCGCCGAAGCGGCCGCGCAAGTGGCGGCCATCGAATCGCGGTTGCCA
GCACTGGAGCAACGTCAGGCGCAACTGATCAACGCCATCAGCCTGTTGATGGGCGAACCGCCGCAGACGCTGGCGAAAGA
GTTATCCACAGATGCGCCGGTGCCGCAGTCGCCGCTGACCGTCGCCATCGGCCTGCCGTCGCAACTGGCCGAACGTCGCC
CGGACATCCGCCAGGCCGAAGCCCGTCTGCACGCCGCCACCGCCAACATCGGCGTGGCCAAGGGCGATTTCTATCCGCGC
ATCACCCTGTCCGGCAACCTCGGCTCGCAAGCCATGCAGCTCAGCGATTTCGGTTCCTGGGGCTCACGCGCCTTCGGCAT
CGGCCCGCAATTCAGCCTGCCGCTGTTCGACGGCGGCCGCTTGCGCGGCGTGCTGCAACTGCGCGAAGCCCAACAGCAGG
AAGCGGCCATCGGTTATCAACAGACCGTCCTGCGCGCCTGGCACGAAATCGACGACCAGCTGACCGCCTACAACGCCAGC
CAGCGCCGCCGCGACAGCCTCGCCGAAGCCGTGCGCCAGAACCAGATCGCCCTGCGCACCGCGCAACAGCAATACGTCGA
AGGCGTGGTCGACTTCGTCAACGTCCTCACCGTGCAAGGCGCACTGCTCGCCACCCAGGAACAATGGGTGGAAAGCTCCA
CCGGCGTTTCACTGGCGATGATCGGGCTGTACCGGGCGTTGGGCGGGGGATGGGAGTCGGTGTATCCGGTGGGGGAGATG
GCGCAGCGTTGA

Upstream 100 bases:

>100_bases
CGGGTCAGCCGCTGGCCGAACGCTTGCGGGTCGGGATGTCGGTAGAGGCGAGCATTGATACCAAAAGCTCAGCGACGTCG
GTGCGTGAGGTGACGCAGCG

Downstream 100 bases:

>100_bases
TTCTCCCACCCGAATGATGGCCTTTCGCTTGACGCTAATCGCCGCTGTCGTAGACTCCGAGCATCCGTCAGGGAGTAACG
GTTATGCGGCGTTTTCGTGG

Product: RND efflux system outer membrane lipoprotein NodT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 483; Mature: 483

Protein sequence:

>483_residues
MKRFQSLTVVLSLSALAACTVGPDFQKPQATQIAEWAKPSKTAVSQAVSEPLNERWWEVFHDAQLSALTQRALRSNLDLQ
LASSRLQQSRAARQVITADRYPTTAATGSYARKRNSGEGLNDPSGHNGDSAFNLWDAGFSASWELDFWGRVRRETEAADA
NLEVAENDRRGVLLAVLADTAQNYIQLRGVQNTRAVTEQNLDVARHSLKLSQLRLNDGVATDLDVAEAAAQVAAIESRLP
ALEQRQAQLINAISLLMGEPPQTLAKELSTDAPVPQSPLTVAIGLPSQLAERRPDIRQAEARLHAATANIGVAKGDFYPR
ITLSGNLGSQAMQLSDFGSWGSRAFGIGPQFSLPLFDGGRLRGVLQLREAQQQEAAIGYQQTVLRAWHEIDDQLTAYNAS
QRRRDSLAEAVRQNQIALRTAQQQYVEGVVDFVNVLTVQGALLATQEQWVESSTGVSLAMIGLYRALGGGWESVYPVGEM
AQR

Sequences:

>Translated_483_residues
MKRFQSLTVVLSLSALAACTVGPDFQKPQATQIAEWAKPSKTAVSQAVSEPLNERWWEVFHDAQLSALTQRALRSNLDLQ
LASSRLQQSRAARQVITADRYPTTAATGSYARKRNSGEGLNDPSGHNGDSAFNLWDAGFSASWELDFWGRVRRETEAADA
NLEVAENDRRGVLLAVLADTAQNYIQLRGVQNTRAVTEQNLDVARHSLKLSQLRLNDGVATDLDVAEAAAQVAAIESRLP
ALEQRQAQLINAISLLMGEPPQTLAKELSTDAPVPQSPLTVAIGLPSQLAERRPDIRQAEARLHAATANIGVAKGDFYPR
ITLSGNLGSQAMQLSDFGSWGSRAFGIGPQFSLPLFDGGRLRGVLQLREAQQQEAAIGYQQTVLRAWHEIDDQLTAYNAS
QRRRDSLAEAVRQNQIALRTAQQQYVEGVVDFVNVLTVQGALLATQEQWVESSTGVSLAMIGLYRALGGGWESVYPVGEM
AQR
>Mature_483_residues
MKRFQSLTVVLSLSALAACTVGPDFQKPQATQIAEWAKPSKTAVSQAVSEPLNERWWEVFHDAQLSALTQRALRSNLDLQ
LASSRLQQSRAARQVITADRYPTTAATGSYARKRNSGEGLNDPSGHNGDSAFNLWDAGFSASWELDFWGRVRRETEAADA
NLEVAENDRRGVLLAVLADTAQNYIQLRGVQNTRAVTEQNLDVARHSLKLSQLRLNDGVATDLDVAEAAAQVAAIESRLP
ALEQRQAQLINAISLLMGEPPQTLAKELSTDAPVPQSPLTVAIGLPSQLAERRPDIRQAEARLHAATANIGVAKGDFYPR
ITLSGNLGSQAMQLSDFGSWGSRAFGIGPQFSLPLFDGGRLRGVLQLREAQQQEAAIGYQQTVLRAWHEIDDQLTAYNAS
QRRRDSLAEAVRQNQIALRTAQQQYVEGVVDFVNVLTVQGALLATQEQWVESSTGVSLAMIGLYRALGGGWESVYPVGEM
AQR

Specific function: The outer membrane component of an antibiotic efflux pump. Confers resistance to numerous structurally unrelated antibiotics such as carbenicillin, chloramphenicol, erythromycin, novobiocin, streptomycin and tetracycline. Is not involved in organic solven

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=468, Percent_Identity=29.4871794871795, Blast_Score=186, Evalue=3e-48,
Organism=Escherichia coli, GI2367348, Length=475, Percent_Identity=24.6315789473684, Blast_Score=116, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 52709; Mature: 52709

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRFQSLTVVLSLSALAACTVGPDFQKPQATQIAEWAKPSKTAVSQAVSEPLNERWWEVF
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
HDAQLSALTQRALRSNLDLQLASSRLQQSRAARQVITADRYPTTAATGSYARKRNSGEGL
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCC
NDPSGHNGDSAFNLWDAGFSASWELDFWGRVRRETEAADANLEVAENDRRGVLLAVLADT
CCCCCCCCCCCEEEECCCCCCEEEEHHHHHHHHHHHHCCCCCEEECCCCCCEEEEHHHHH
AQNYIQLRGVQNTRAVTEQNLDVARHSLKLSQLRLNDGVATDLDVAEAAAQVAAIESRLP
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHCC
ALEQRQAQLINAISLLMGEPPQTLAKELSTDAPVPQSPLTVAIGLPSQLAERRPDIRQAE
HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHCCCCHHHHH
ARLHAATANIGVAKGDFYPRITLSGNLGSQAMQLSDFGSWGSRAFGIGPQFSLPLFDGGR
HHHHHHHCCCEEECCCCCEEEEEECCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCH
LRGVLQLREAQQQEAAIGYQQTVLRAWHEIDDQLTAYNASQRRRDSLAEAVRQNQIALRT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
AQQQYVEGVVDFVNVLTVQGALLATQEQWVESSTGVSLAMIGLYRALGGGWESVYPVGEM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHCCCHHHH
AQR
HCC
>Mature Secondary Structure
MKRFQSLTVVLSLSALAACTVGPDFQKPQATQIAEWAKPSKTAVSQAVSEPLNERWWEVF
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
HDAQLSALTQRALRSNLDLQLASSRLQQSRAARQVITADRYPTTAATGSYARKRNSGEGL
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCC
NDPSGHNGDSAFNLWDAGFSASWELDFWGRVRRETEAADANLEVAENDRRGVLLAVLADT
CCCCCCCCCCCEEEECCCCCCEEEEHHHHHHHHHHHHCCCCCEEECCCCCCEEEEHHHHH
AQNYIQLRGVQNTRAVTEQNLDVARHSLKLSQLRLNDGVATDLDVAEAAAQVAAIESRLP
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHCC
ALEQRQAQLINAISLLMGEPPQTLAKELSTDAPVPQSPLTVAIGLPSQLAERRPDIRQAE
HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHCCCCHHHHH
ARLHAATANIGVAKGDFYPRITLSGNLGSQAMQLSDFGSWGSRAFGIGPQFSLPLFDGGR
HHHHHHHCCCEEECCCCCEEEEEECCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCH
LRGVLQLREAQQQEAAIGYQQTVLRAWHEIDDQLTAYNASQRRRDSLAEAVRQNQIALRT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
AQQQYVEGVVDFVNVLTVQGALLATQEQWVESSTGVSLAMIGLYRALGGGWESVYPVGEM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHCCCHHHH
AQR
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11160799 [H]