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The map label for this gene is rne

Identifier: 76818595

GI number: 76818595

Start: 375976

End: 378858

Strand: Direct

Name: rne

Synonym: BURPS1710b_A0252

Alternate gene names: NA

Gene position: 375976-378858 (Clockwise)

Preceding gene: 76818391

Following gene: 76818163

Centisome position: 11.82

GC content: 70.55

Gene sequence:

>2883_bases
ATGAAAATAAGTCAGCATGCGGGGTCGCTTCGCTCCACGATCGATCGGTCAATGCGGCTGCGCGAAGGTGCCCGCGTCCG
TGCCCGAATGCGCGGCCTGCATCGCCGGCGCCGGGCGCGGCGAGCGCGCCGATCGCGCCGCCCGCTCGCGCACGCCGGCG
CGCGCGAGCACCGCGCCGAGCAGCACGTTCGCGCCCGCCTCGACGTGCTCGGGCAACGCACGCTCGGCTGCGTTGTGCGA
CAGCCCGCCGACGCACGGAATGAACACCATCGCGCTCGGCACGCAGCGCGCGAGATGAACCGCATCGTGCCCGGCGCCGC
TCACGATCCGCTCGTGCGCATAGCCGCCGCCGCGCGCGGCCGCCTCGACGAGCGCGATGCACGCCGGATCGAACGGCGTC
GCCGGGCTCGACCAGTGCTGGCTGATGTCGACCGCGACGCCGCGTCGCCCGGCGATTTGCGCGCACACGCGGCGCAGCTC
GCGCTCGATCGCGTCGAGCCGCGCATCGTCGGGATGGCGAAGATCGATGCTGAACGTGACGCGCTCGGCGATCGTGTTGC
GCGACGCGTTGTCGATCGCGCTCTGCCCGATCGTCGCGAGCGCGTCGGGCGCATGGCGCGCGACGAGCGCCTCGATCGCG
AGCGCGAGCTCGGCGCTCGCGAACAGCGCGTCCTTGCGGTACGGCATCGGCGTCGTGCCGGCATGCGCGGCCGCACCCGT
GACCGTCGCGTCGAGCCAGCGGATCGCCTGCCCGCCCGTGACGACGCCGATCGTCGCGCCGTGCCGCTCCAGCACCGGGC
CCTGCTCGATATGCGCCTCGAAGTACGCATCGACGCGCTCGTGCAGCGGCGCGAGCGCCGGCTCCAGGCCGCGCGCCCCG
TGCGCGCCGCGCATCCACGCCGAGCGCAGCGCATCGCGATAGCCGCACGCTTCGAGCGCTTCGGCAAGCGCGATGCCGTC
CGCATCGCGCGCGGCGAGCGCCGCGTCGAGCGGCAATGCGCCGGTAAACACCGCCGAGCCGAGCATCGCCGGCGTGAAGC
GCACGCCCTCCTCGTTGGTCCACGATACGATCTCGATCGGCTTGCCGGTGACGATCCCGCGATCGTTCAGCGTGCGCACG
AGCTCGAGCCCGGCGAGCACGCCGTACGCGCCGTCGAAGCGCCCCCCTTCGGGCTGCGTGTCGAGATGACTGCCGACGAG
CACGGCCGGCTGCGTGTCGTCCGCGCCGGCGCGCCGGGCGAACAGGTTGCCGATCGCATCGACGCGCACCGCCATCCCCG
CGTCGCGACACCATTGCGCGAAGCGTTCGCGGCCGCGCCGGTCGGCCTCGGTCAGCGCGAGCCGGCGCACGCCGCCGCGC
GCGGTGCCGCCGATTCGCGCGAGTTCCGTCAGGCTGTTCCAGAGCCGCCTACCGTCAATTTCCCACACCGAGATCTCCCT
CCTTTTCCTGAATCAGCGCGTGAGCACGGCGTCGGCGACGTCGGCCCGCCGATGGCGGCGCGCGTCGAGCGCGATCACGC
CGCCGAGCGAGAGCGCCGCGAGGCACGTATAGAACACCGCGAGCGGCCACCACTGCCCGGCGAACCGGTGCGCGAGCCAC
GTGCCGACGAGCGGCGTCAGCCCGCCCGCGATCGCGCCGCACATCTGGTACGAGATCGAGATCGCCGAATAGCGCACGCG
CGTCGGGAACGCGCCGCTCACGAAGCCCGCGATCACCGAGTAGAAACCGGCGAGAAACACGGTCGCGATCGCGATGCCGA
TCACCATCGGCGCGAGCCGCCCCGTCTGCACGAGCGCGAACATCGGATAGGGCGAGGCCATCGCGAACAGCGCGGCGAGC
TTGAGAAAGCGTGCGTCGCCGAGCTTGCCGCCGAGCCACGCGGCGATCGGCTGCGTCACGAACTGGATGATCGCGACGAT
GAACAGGCAATCGAGGATCAGCGATTTCGTCACGCCCACATGCTGCGTCGTGAACGCGATCATGAACGTGTTCGTGAAAT
ACAGCCCCGCGATACCGATCGTGTTCGCGCACAGGCAGAACAGCAGCATCGCGCGCGACGTGCGCAGCACCTCGGCGAGC
GGCCGCGCGACGGTGCGCGACATCGCCTTCTCATGCGCGAACTCGGGCGATTCGTCGACCTTCAGCCGCACGAACACGCC
GACCGCGAGCAGCGCGATGCTCGCGAGAAACGGCAGCCGCCAGCCCCAGGACATGAACGCGCCGTGCTCCATCGACGCGA
CCGCGCGAAACGCGACGAGCGACAGGATCAGCCCGGCCGGGCTGCCCAACTGCGCGAACGAAGCGAAGAACGTGCGCCGC
CCATACGGCGCATGCTCGCCCGCCATCAGCACCGCGCCGCCCCACTCGCCGCCCACCGCGATGCCCTGCACGATGCGCAG
CAGCACGAGCAGCACGGGCGCGAGCAGGCCGACGCGTTCGTAGGTCGGCAGCAGACCGACGCAGACCGTCGCCGCGCCCA
TCAGCGCGAGCGTCGCCATCAGCGCCTTCTTGCGGCCGATCCGGTCGCCGAGATGGCCGAAGAAGAGCCCGCCGAGCGGG
CGCGCGAAGAAGCCGACCGCGAACGTCGCGAACGACGCCATCGTGCTCGTGAACGGATCGTGCGACGGGAAGAACAGCTC
GCCGAAGACGAGCGCGGCCGCGTTCGCGTAGATGTAGAAGTCGTACCACTCGATCATCGTGCCGACGAACGCGGCGCCGG
CCGCACGGCGCGGCTGGCGCGCCGGCGGGCTCGGTGGGATGCCCCGGGTCAATGCGTTTCTCCTCACTCGAATGTCCGCC
CCGGCCGAATCGTCCGGATTCGGCAAATGGGCGTTTTATCGCGCACCGGGATTAATCGGTCAAATTCTAAGTTATTATCT
TAA

Upstream 100 bases:

>100_bases
CCGCGCCGAGCAGCCGCACGGCTCGCTCGGGCACTTCGTGCGGCGCGCGCATCTTGCCGCGCGACAGGTAAGTGAGCGGA
CTGTGCTTCAGTTGGTCCGG

Downstream 100 bases:

>100_bases
GAATAAATTTCATTAATCCAGTTCTACGATGCAAAATCGTTTCTCTGGAGTAAAAATAAATGTCGAATATTCGAAGCCAC
GTCTCCCGCGTTTTGATGGA

Product: ribonuclease E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 960; Mature: 960

Protein sequence:

>960_residues
MKISQHAGSLRSTIDRSMRLREGARVRARMRGLHRRRRARRARRSRRPLAHAGAREHRAEQHVRARLDVLGQRTLGCVVR
QPADARNEHHRARHAAREMNRIVPGAAHDPLVRIAAAARGRLDERDARRIERRRRARPVLADVDRDAASPGDLRAHAAQL
ALDRVEPRIVGMAKIDAERDALGDRVARRVVDRALPDRRERVGRMARDERLDRERELGAREQRVLAVRHRRRAGMRGRTR
DRRVEPADRLPARDDADRRAVPLQHRALLDMRLEVRIDALVQRRERRLQAARPVRAAHPRRAQRIAIAARFERFGKRDAV
RIARGERRVERQCAGKHRRAEHRRREAHALLVGPRYDLDRLAGDDPAIVQRAHELEPGEHAVRAVEAPPFGLRVEMTADE
HGRLRVVRAGAPGEQVADRIDAHRHPRVATPLREAFAAAPVGLGQREPAHAAARGAADSREFRQAVPEPPTVNFPHRDLP
PFPESAREHGVGDVGPPMAARVERDHAAERERREARIEHRERPPLPGEPVREPRADERRQPARDRAAHLVRDRDRRIAHA
RRERAAHEARDHRVETGEKHGRDRDADHHRREPPRLHEREHRIGRGHREQRGELEKACVAELAAEPRGDRLRHELDDRDD
EQAIEDQRFRHAHMLRRERDHERVREIQPRDTDRVRAQAEQQHRARRAQHLGERPRDGARHRLLMRELGRFVDLQPHEHA
DREQRDAREKRQPPAPGHERAVLHRRDRAKRDERQDQPGRAAQLRERSEERAPPIRRMLARHQHRAAPLAAHRDALHDAQ
QHEQHGREQADAFVGRQQTDADRRRAHQRERRHQRLLAADPVAEMAEEEPAERAREEADRERRERRHRARERIVRREEQL
AEDERGRVRVDVEVVPLDHRADERGAGRTARLARRRARWDAPGQCVSPHSNVRPGRIVRIRQMGVLSRTGINRSNSKLLS

Sequences:

>Translated_960_residues
MKISQHAGSLRSTIDRSMRLREGARVRARMRGLHRRRRARRARRSRRPLAHAGAREHRAEQHVRARLDVLGQRTLGCVVR
QPADARNEHHRARHAAREMNRIVPGAAHDPLVRIAAAARGRLDERDARRIERRRRARPVLADVDRDAASPGDLRAHAAQL
ALDRVEPRIVGMAKIDAERDALGDRVARRVVDRALPDRRERVGRMARDERLDRERELGAREQRVLAVRHRRRAGMRGRTR
DRRVEPADRLPARDDADRRAVPLQHRALLDMRLEVRIDALVQRRERRLQAARPVRAAHPRRAQRIAIAARFERFGKRDAV
RIARGERRVERQCAGKHRRAEHRRREAHALLVGPRYDLDRLAGDDPAIVQRAHELEPGEHAVRAVEAPPFGLRVEMTADE
HGRLRVVRAGAPGEQVADRIDAHRHPRVATPLREAFAAAPVGLGQREPAHAAARGAADSREFRQAVPEPPTVNFPHRDLP
PFPESAREHGVGDVGPPMAARVERDHAAERERREARIEHRERPPLPGEPVREPRADERRQPARDRAAHLVRDRDRRIAHA
RRERAAHEARDHRVETGEKHGRDRDADHHRREPPRLHEREHRIGRGHREQRGELEKACVAELAAEPRGDRLRHELDDRDD
EQAIEDQRFRHAHMLRRERDHERVREIQPRDTDRVRAQAEQQHRARRAQHLGERPRDGARHRLLMRELGRFVDLQPHEHA
DREQRDAREKRQPPAPGHERAVLHRRDRAKRDERQDQPGRAAQLRERSEERAPPIRRMLARHQHRAAPLAAHRDALHDAQ
QHEQHGREQADAFVGRQQTDADRRRAHQRERRHQRLLAADPVAEMAEEEPAERAREEADRERRERRHRARERIVRREEQL
AEDERGRVRVDVEVVPLDHRADERGAGRTARLARRRARWDAPGQCVSPHSNVRPGRIVRIRQMGVLSRTGINRSNSKLLS
>Mature_960_residues
MKISQHAGSLRSTIDRSMRLREGARVRARMRGLHRRRRARRARRSRRPLAHAGAREHRAEQHVRARLDVLGQRTLGCVVR
QPADARNEHHRARHAAREMNRIVPGAAHDPLVRIAAAARGRLDERDARRIERRRRARPVLADVDRDAASPGDLRAHAAQL
ALDRVEPRIVGMAKIDAERDALGDRVARRVVDRALPDRRERVGRMARDERLDRERELGAREQRVLAVRHRRRAGMRGRTR
DRRVEPADRLPARDDADRRAVPLQHRALLDMRLEVRIDALVQRRERRLQAARPVRAAHPRRAQRIAIAARFERFGKRDAV
RIARGERRVERQCAGKHRRAEHRRREAHALLVGPRYDLDRLAGDDPAIVQRAHELEPGEHAVRAVEAPPFGLRVEMTADE
HGRLRVVRAGAPGEQVADRIDAHRHPRVATPLREAFAAAPVGLGQREPAHAAARGAADSREFRQAVPEPPTVNFPHRDLP
PFPESAREHGVGDVGPPMAARVERDHAAERERREARIEHRERPPLPGEPVREPRADERRQPARDRAAHLVRDRDRRIAHA
RRERAAHEARDHRVETGEKHGRDRDADHHRREPPRLHEREHRIGRGHREQRGELEKACVAELAAEPRGDRLRHELDDRDD
EQAIEDQRFRHAHMLRRERDHERVREIQPRDTDRVRAQAEQQHRARRAQHLGERPRDGARHRLLMRELGRFVDLQPHEHA
DREQRDAREKRQPPAPGHERAVLHRRDRAKRDERQDQPGRAAQLRERSEERAPPIRRMLARHQHRAAPLAAHRDALHDAQ
QHEQHGREQADAFVGRQQTDADRRRAHQRERRHQRLLAADPVAEMAEEEPAERAREEADRERRERRHRARERIVRREEQL
AEDERGRVRVDVEVVPLDHRADERGAGRTARLARRRARWDAPGQCVSPHSNVRPGRIVRIRQMGVLSRTGINRSNSKLLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 111726; Mature: 111726

Theoretical pI: Translated: 12.03; Mature: 12.03

Prosite motif: PS50096 IQ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKISQHAGSLRSTIDRSMRLREGARVRARMRGLHRRRRARRARRSRRPLAHAGAREHRAE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHH
QHVRARLDVLGQRTLGCVVRQPADARNEHHRARHAAREMNRIVPGAAHDPLVRIAAAARG
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
RLDERDARRIERRRRARPVLADVDRDAASPGDLRAHAAQLALDRVEPRIVGMAKIDAERD
CCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHEEHHHHCHHHH
ALGDRVARRVVDRALPDRRERVGRMARDERLDRERELGAREQRVLAVRHRRRAGMRGRTR
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCC
DRRVEPADRLPARDDADRRAVPLQHRALLDMRLEVRIDALVQRRERRLQAARPVRAAHPR
CCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCH
RAQRIAIAARFERFGKRDAVRIARGERRVERQCAGKHRRAEHRRREAHALLVGPRYDLDR
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCHHH
LAGDDPAIVQRAHELEPGEHAVRAVEAPPFGLRVEMTADEHGRLRVVRAGAPGEQVADRI
HCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEECCCCCCCEEEEECCCCHHHHHHHH
DAHRHPRVATPLREAFAAAPVGLGQREPAHAAARGAADSREFRQAVPEPPTVNFPHRDLP
HHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCC
PFPESAREHGVGDVGPPMAARVERDHAAERERREARIEHRERPPLPGEPVREPRADERRQ
CCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCC
PARDRAAHLVRDRDRRIAHARRERAAHEARDHRVETGEKHGRDRDADHHRREPPRLHERE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHCCCCCHHHHHH
HRIGRGHREQRGELEKACVAELAAEPRGDRLRHELDDRDDEQAIEDQRFRHAHMLRRERD
HHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
HERVREIQPRDTDRVRAQAEQQHRARRAQHLGERPRDGARHRLLMRELGRFVDLQPHEHA
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
DREQRDAREKRQPPAPGHERAVLHRRDRAKRDERQDQPGRAAQLRERSEERAPPIRRMLA
CHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHH
RHQHRAAPLAAHRDALHDAQQHEQHGREQADAFVGRQQTDADRRRAHQRERRHQRLLAAD
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
PVAEMAEEEPAERAREEADRERRERRHRARERIVRREEQLAEDERGRVRVDVEVVPLDHR
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCC
ADERGAGRTARLARRRARWDAPGQCVSPHSNVRPGRIVRIRQMGVLSRTGINRSNSKLLS
CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKISQHAGSLRSTIDRSMRLREGARVRARMRGLHRRRRARRARRSRRPLAHAGAREHRAE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHH
QHVRARLDVLGQRTLGCVVRQPADARNEHHRARHAAREMNRIVPGAAHDPLVRIAAAARG
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
RLDERDARRIERRRRARPVLADVDRDAASPGDLRAHAAQLALDRVEPRIVGMAKIDAERD
CCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHEEHHHHCHHHH
ALGDRVARRVVDRALPDRRERVGRMARDERLDRERELGAREQRVLAVRHRRRAGMRGRTR
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCC
DRRVEPADRLPARDDADRRAVPLQHRALLDMRLEVRIDALVQRRERRLQAARPVRAAHPR
CCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCH
RAQRIAIAARFERFGKRDAVRIARGERRVERQCAGKHRRAEHRRREAHALLVGPRYDLDR
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCHHH
LAGDDPAIVQRAHELEPGEHAVRAVEAPPFGLRVEMTADEHGRLRVVRAGAPGEQVADRI
HCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEECCCCCCCEEEEECCCCHHHHHHHH
DAHRHPRVATPLREAFAAAPVGLGQREPAHAAARGAADSREFRQAVPEPPTVNFPHRDLP
HHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCC
PFPESAREHGVGDVGPPMAARVERDHAAERERREARIEHRERPPLPGEPVREPRADERRQ
CCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCC
PARDRAAHLVRDRDRRIAHARRERAAHEARDHRVETGEKHGRDRDADHHRREPPRLHERE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHCCCCCHHHHHH
HRIGRGHREQRGELEKACVAELAAEPRGDRLRHELDDRDDEQAIEDQRFRHAHMLRRERD
HHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
HERVREIQPRDTDRVRAQAEQQHRARRAQHLGERPRDGARHRLLMRELGRFVDLQPHEHA
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
DREQRDAREKRQPPAPGHERAVLHRRDRAKRDERQDQPGRAAQLRERSEERAPPIRRMLA
CHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHH
RHQHRAAPLAAHRDALHDAQQHEQHGREQADAFVGRQQTDADRRRAHQRERRHQRLLAAD
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
PVAEMAEEEPAERAREEADRERRERRHRARERIVRREEQLAEDERGRVRVDVEVVPLDHR
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCC
ADERGAGRTARLARRRARWDAPGQCVSPHSNVRPGRIVRIRQMGVLSRTGINRSNSKLLS
CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA