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The map label for this gene is ywbI [H]

Identifier: 76818163

GI number: 76818163

Start: 378918

End: 379889

Strand: Direct

Name: ywbI [H]

Synonym: BURPS1710b_A0254

Alternate gene names: 76818163

Gene position: 378918-379889 (Clockwise)

Preceding gene: 76818595

Following gene: 76818126

Centisome position: 11.91

GC content: 63.89

Gene sequence:

>972_bases
ATGTCGAATATTCGAAGCCACGTCTCCCGCGTTTTGATGGACCGCCTGGACTGGAATCTGCTGCGCACGTATCTGACGAT
CATGCAGGAGCGCAGCATCAGCCGCGCGGCCGCGCGGCTGCACCTGACCCAGCCGGCGGTGAGCCAGGCGCTCAAGCGGC
TCGAGGATTCGCTCGGCCGCACGCTGATCCAGCGGCGCGGCGCGCAGTTCCAGCCGACGCGCGCAGGCGAGGAGGTCTAC
CGGATCGCGACCGATATCTACGGCCACATGTCGCGGCTCGACAACGAACTCGACGACCGCGGCGGCGAGCTGATCGGCTC
GGTGCGCCTGTTGTGCGTGAGCCGCGTCGAATCGCCCGTCTACGACGAGTTTCTCGCCGAGTTCCGCCGCACTTATCCGC
GCGTCGACTTGCACGTCGAAGTGATGCGCTCCGCGGATATTCTCTCTTCTTTATTGCAAAAAACCGCGACTTGCGGACTC
GCATTATGCCGAACGCCGGTCGATAAAATCGAATTACGCAGTTTTCTGCGACAACGCTACGCAATGTTTTGCGGACGTCA
CCACCGGTTATTCGGCCGCCAGGCGCTGAAAATCGAGGATCTGCTCGCCGAGAATTTCGTTTCCTTCACGAGCGACCAGA
TCGGCGACGCGCTCGCGCCGCTCACCGTGTTCCGCGATCAGCGCGGCTTCACCGGGCGCATCGTCGCGACATCGCCGAGC
CTCGACGAAATCCGCCGCCTCGTGTTCGCGGGCTACGGCATTGGCTGCCTGCCCGAGCACATCGTGCGCGACGACCTCGC
GCGCCAGCGGCTCTGGCGGCTGCCGCCGGAGGAAGGGCTGCTCGACGTCGAGATCTTTCTGATGTGGAACCGCGAGCGCC
GGATGAATGCGGCGGAGAACGTGTTCATCGACGCGTTCCAGCGCTACGTGCAGCGGTATCCGATGGCCGAGCGGCTGGGG
ATGCTGCATTGA

Upstream 100 bases:

>100_bases
GCACCGGGATTAATCGGTCAAATTCTAAGTTATTATCTTAAGAATAAATTTCATTAATCCAGTTCTACGATGCAAAATCG
TTTCTCTGGAGTAAAAATAA

Downstream 100 bases:

>100_bases
GCGGCGAGCGCGCAGAGGGTCGGAAACCGATCGCCGCCCAGCTTGACGCTACCCGCCCGGCCCAACTCCGCCGGGCGCCG
CCCCACCGCCCGCGCGCACC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MSNIRSHVSRVLMDRLDWNLLRTYLTIMQERSISRAAARLHLTQPAVSQALKRLEDSLGRTLIQRRGAQFQPTRAGEEVY
RIATDIYGHMSRLDNELDDRGGELIGSVRLLCVSRVESPVYDEFLAEFRRTYPRVDLHVEVMRSADILSSLLQKTATCGL
ALCRTPVDKIELRSFLRQRYAMFCGRHHRLFGRQALKIEDLLAENFVSFTSDQIGDALAPLTVFRDQRGFTGRIVATSPS
LDEIRRLVFAGYGIGCLPEHIVRDDLARQRLWRLPPEEGLLDVEIFLMWNRERRMNAAENVFIDAFQRYVQRYPMAERLG
MLH

Sequences:

>Translated_323_residues
MSNIRSHVSRVLMDRLDWNLLRTYLTIMQERSISRAAARLHLTQPAVSQALKRLEDSLGRTLIQRRGAQFQPTRAGEEVY
RIATDIYGHMSRLDNELDDRGGELIGSVRLLCVSRVESPVYDEFLAEFRRTYPRVDLHVEVMRSADILSSLLQKTATCGL
ALCRTPVDKIELRSFLRQRYAMFCGRHHRLFGRQALKIEDLLAENFVSFTSDQIGDALAPLTVFRDQRGFTGRIVATSPS
LDEIRRLVFAGYGIGCLPEHIVRDDLARQRLWRLPPEEGLLDVEIFLMWNRERRMNAAENVFIDAFQRYVQRYPMAERLG
MLH
>Mature_322_residues
SNIRSHVSRVLMDRLDWNLLRTYLTIMQERSISRAAARLHLTQPAVSQALKRLEDSLGRTLIQRRGAQFQPTRAGEEVYR
IATDIYGHMSRLDNELDDRGGELIGSVRLLCVSRVESPVYDEFLAEFRRTYPRVDLHVEVMRSADILSSLLQKTATCGLA
LCRTPVDKIELRSFLRQRYAMFCGRHHRLFGRQALKIEDLLAENFVSFTSDQIGDALAPLTVFRDQRGFTGRIVATSPSL
DEIRRLVFAGYGIGCLPEHIVRDDLARQRLWRLPPEEGLLDVEIFLMWNRERRMNAAENVFIDAFQRYVQRYPMAERLGM
LH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788748, Length=243, Percent_Identity=25.1028806584362, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787601, Length=290, Percent_Identity=23.1034482758621, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI157672245, Length=285, Percent_Identity=23.5087719298246, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787530, Length=246, Percent_Identity=26.4227642276423, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1787879, Length=293, Percent_Identity=25.938566552901, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI145693105, Length=247, Percent_Identity=19.8380566801619, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787589, Length=129, Percent_Identity=27.1317829457364, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 37396; Mature: 37265

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNIRSHVSRVLMDRLDWNLLRTYLTIMQERSISRAAARLHLTQPAVSQALKRLEDSLGR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
TLIQRRGAQFQPTRAGEEVYRIATDIYGHMSRLDNELDDRGGELIGSVRLLCVSRVESPV
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
YDEFLAEFRRTYPRVDLHVEVMRSADILSSLLQKTATCGLALCRTPVDKIELRSFLRQRY
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
AMFCGRHHRLFGRQALKIEDLLAENFVSFTSDQIGDALAPLTVFRDQRGFTGRIVATSPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
LDEIRRLVFAGYGIGCLPEHIVRDDLARQRLWRLPPEEGLLDVEIFLMWNRERRMNAAEN
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCHHHCCHHHH
VFIDAFQRYVQRYPMAERLGMLH
HHHHHHHHHHHHCCHHHHCCCCC
>Mature Secondary Structure 
SNIRSHVSRVLMDRLDWNLLRTYLTIMQERSISRAAARLHLTQPAVSQALKRLEDSLGR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
TLIQRRGAQFQPTRAGEEVYRIATDIYGHMSRLDNELDDRGGELIGSVRLLCVSRVESPV
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
YDEFLAEFRRTYPRVDLHVEVMRSADILSSLLQKTATCGLALCRTPVDKIELRSFLRQRY
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
AMFCGRHHRLFGRQALKIEDLLAENFVSFTSDQIGDALAPLTVFRDQRGFTGRIVATSPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
LDEIRRLVFAGYGIGCLPEHIVRDDLARQRLWRLPPEEGLLDVEIFLMWNRERRMNAAEN
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCHHHCCHHHH
VFIDAFQRYVQRYPMAERLGMLH
HHHHHHHHHHHHCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]