Click here to switch to the map view.

The map label for this gene is cpcG3 [H]

Identifier: 75909148

GI number: 75909148

Start: 3641979

End: 3642692

Strand: Direct

Name: cpcG3 [H]

Synonym: Ava_2938

Alternate gene names: 75909148

Gene position: 3641979-3642692 (Clockwise)

Preceding gene: 75909147

Following gene: 75909149

Centisome position: 57.21

GC content: 43.98

Gene sequence:

>714_bases
ATGGCATTACCTTTATTGGAATACAAACCCACAACTCAAAATCAACGAGTTCAGAGTTTTGGGACGGCGGATGTCAATGA
GGACACCCCTTATATCTACCGTCTAGAAGATGCCAACTCTCCCAGTGAAATTGAAGAACTGATTTGGGCTGCCTATCGCC
AAGTCTTTAACGAACAAGAGATTCTCAAGTTCAACAGACAAATCGGCTTAGAAACCCAACTCAAAAATCGGTCAATCACA
GTTAAGGATTTTATTCGGGGTTTAGCCAAGTCAGAGCGCTTTTATCAGCTAGTTGTTACACCCAACAACAACTATCGGCT
GGTGGAAATGAGTCTCAAGCGGCTATTGGGACGCTCTCCCTATAACGAAGAAGAAAAAATTGCTTGGTCAATTCAAATTG
CCAGCAAAGGTTGGGGAGGATTTGTTGATGCACTGATTGATAGTACAGAGTATGAACAAGCCTTCGGTGATAATGCCGTA
CCCTACCAACGCAAACGGTTGACTACAGACCGACCATTCAGCTTTACACCCCGTTATGGTGCAGATTACCGCGATCGCGC
TGGTATTGTTAGACCAGGACGTATGAGTAACTGGAATAACAGCGCCAACCAAAATTATGATGGAATGGCAATATTAGGCG
TATTGCTAGCCATCAGTACCGGACTGACTTTTCTATTCGTCCTAAATTGGTTGGGAATCAGTTCTAGCTTCTGA

Upstream 100 bases:

>100_bases
ACACCACACCAACAGGGATTCCCATCTCCGTAAATCCTAGCGCCAATTTCCCCGTGCGGTAAGTTGCCGACCTACTTCTT
TAAAACCGGAGATTTTCACA

Downstream 100 bases:

>100_bases
ACCTAATGCGGGAAAATAAGTAAAGCATGAAGGAGGATTTTGAGAAATCAAGCCTCTTTCAGTTAATAAAGCTAGCTGTT
TAACTTTTTAATAAGGGGAA

Product: phycobilisome linker polypeptide

Products: NA

Alternate protein names: L-RC 27.2 [H]

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MALPLLEYKPTTQNQRVQSFGTADVNEDTPYIYRLEDANSPSEIEELIWAAYRQVFNEQEILKFNRQIGLETQLKNRSIT
VKDFIRGLAKSERFYQLVVTPNNNYRLVEMSLKRLLGRSPYNEEEKIAWSIQIASKGWGGFVDALIDSTEYEQAFGDNAV
PYQRKRLTTDRPFSFTPRYGADYRDRAGIVRPGRMSNWNNSANQNYDGMAILGVLLAISTGLTFLFVLNWLGISSSF

Sequences:

>Translated_237_residues
MALPLLEYKPTTQNQRVQSFGTADVNEDTPYIYRLEDANSPSEIEELIWAAYRQVFNEQEILKFNRQIGLETQLKNRSIT
VKDFIRGLAKSERFYQLVVTPNNNYRLVEMSLKRLLGRSPYNEEEKIAWSIQIASKGWGGFVDALIDSTEYEQAFGDNAV
PYQRKRLTTDRPFSFTPRYGADYRDRAGIVRPGRMSNWNNSANQNYDGMAILGVLLAISTGLTFLFVLNWLGISSSF
>Mature_236_residues
ALPLLEYKPTTQNQRVQSFGTADVNEDTPYIYRLEDANSPSEIEELIWAAYRQVFNEQEILKFNRQIGLETQLKNRSITV
KDFIRGLAKSERFYQLVVTPNNNYRLVEMSLKRLLGRSPYNEEEKIAWSIQIASKGWGGFVDALIDSTEYEQAFGDNAVP
YQRKRLTTDRPFSFTPRYGADYRDRAGIVRPGRMSNWNNSANQNYDGMAILGVLLAISTGLTFLFVLNWLGISSSF

Specific function: Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PBS-linker domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001297
- InterPro:   IPR016470
- ProDom:   PD000852 [H]

Pfam domain/function: PF00427 PBS_linker_poly [H]

EC number: NA

Molecular weight: Translated: 27221; Mature: 27090

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALPLLEYKPTTQNQRVQSFGTADVNEDTPYIYRLEDANSPSEIEELIWAAYRQVFNEQE
CCCCCCCCCCCCCCHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCHHH
ILKFNRQIGLETQLKNRSITVKDFIRGLAKSERFYQLVVTPNNNYRLVEMSLKRLLGRSP
HHHHHHHCCCEEECCCCCEEHHHHHHHHHCCCCEEEEEEECCCCEEEHHHHHHHHHCCCC
YNEEEKIAWSIQIASKGWGGFVDALIDSTEYEQAFGDNAVPYQRKRLTTDRPFSFTPRYG
CCCCCEEEEEEEEECCCCCHHHHHHHCCHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCC
ADYRDRAGIVRPGRMSNWNNSANQNYDGMAILGVLLAISTGLTFLFVLNWLGISSSF
CCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ALPLLEYKPTTQNQRVQSFGTADVNEDTPYIYRLEDANSPSEIEELIWAAYRQVFNEQE
CCCCCCCCCCCCCHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCHHH
ILKFNRQIGLETQLKNRSITVKDFIRGLAKSERFYQLVVTPNNNYRLVEMSLKRLLGRSP
HHHHHHHCCCEEECCCCCEEHHHHHHHHHCCCCEEEEEEECCCCEEEHHHHHHHHHCCCC
YNEEEKIAWSIQIASKGWGGFVDALIDSTEYEQAFGDNAVPYQRKRLTTDRPFSFTPRYG
CCCCCEEEEEEEEECCCCCHHHHHHHCCHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCC
ADYRDRAGIVRPGRMSNWNNSANQNYDGMAILGVLLAISTGLTFLFVLNWLGISSSF
CCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1743523; 11759840 [H]