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The map label for this gene is cpcG2 [H]

Identifier: 75909147

GI number: 75909147

Start: 3641197

End: 3641940

Strand: Direct

Name: cpcG2 [H]

Synonym: Ava_2937

Alternate gene names: 75909147

Gene position: 3641197-3641940 (Clockwise)

Preceding gene: 75909146

Following gene: 75909148

Centisome position: 57.2

GC content: 45.43

Gene sequence:

>744_bases
ATGTCAATCCCATTACTTGAATACAAACCCAGTTCTCAAAACCAGCGTGTTCCTGGGTACGAAGTTCCTAACGAAGATAC
CCCCAGAATCTACCGCATCGAAGATGCCGCCTACGATAGCGAACTCAAAGAAATCATTTGGGCTACTTATCGGCAAGTAT
TTAGCGAACACGTCATTTTGAAATTCTTCCGCCAGGGCAACCTAGAATCCCAACTGAAAAATCGGGCAATCAGCGTCCGC
GACTTCGTTCGGGGTCTAGCAAAATCAGAGGCTTTCAAGACTTTAGTCATCAAGAGTAACTCTAATTACCGCCTTGTAGA
ATTAGCACTGAAACGCCTTTTGGGTCGTGCGCCTTATAATAAGGATGAAGAAATTGCATGGTCAATCAAGATAGCAACCA
ATGGTTGGGATGGCTTTGTTGATGCGCTGCTAGATTCGGAAGAATATCAGAGCAACTTCGGTGAGAACATAGTCCCCTAC
CAACGGCGACGCTACAAAGATAGACCCTTCAATCTAGTCACCCCACGCTACGGCAACTACTGGCGCGATAAGTTGGAAAG
TGAGCGCTACATAGAAGGTGATATTAAGAATTTCTTGGAATTAGCTAAATCCATAGAAATTAAGACCGTCACCTTTACAC
CAGTCAGCACTGCCAATATTAACATTCCCGATACAACTCGGAACACCACACCAACAGGGATTCCCATCTCCGTAAATCCT
AGCGCCAATTTCCCCGTGCGGTAA

Upstream 100 bases:

>100_bases
CACTTGAAGCGATAACTGTACAGACGCGATTCATCGCATTTCTAACAATTGTACAGACGCGATTCATCGCGTCTCCAACA
ACTGACAACTAAACCAAACT

Downstream 100 bases:

>100_bases
GTTGCCGACCTACTTCTTTAAAACCGGAGATTTTCACAATGGCATTACCTTTATTGGAATACAAACCCACAACTCAAAAT
CAACGAGTTCAGAGTTTTGG

Product: phycobilisome linker polypeptide

Products: NA

Alternate protein names: L-RC 28.5 [H]

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MSIPLLEYKPSSQNQRVPGYEVPNEDTPRIYRIEDAAYDSELKEIIWATYRQVFSEHVILKFFRQGNLESQLKNRAISVR
DFVRGLAKSEAFKTLVIKSNSNYRLVELALKRLLGRAPYNKDEEIAWSIKIATNGWDGFVDALLDSEEYQSNFGENIVPY
QRRRYKDRPFNLVTPRYGNYWRDKLESERYIEGDIKNFLELAKSIEIKTVTFTPVSTANINIPDTTRNTTPTGIPISVNP
SANFPVR

Sequences:

>Translated_247_residues
MSIPLLEYKPSSQNQRVPGYEVPNEDTPRIYRIEDAAYDSELKEIIWATYRQVFSEHVILKFFRQGNLESQLKNRAISVR
DFVRGLAKSEAFKTLVIKSNSNYRLVELALKRLLGRAPYNKDEEIAWSIKIATNGWDGFVDALLDSEEYQSNFGENIVPY
QRRRYKDRPFNLVTPRYGNYWRDKLESERYIEGDIKNFLELAKSIEIKTVTFTPVSTANINIPDTTRNTTPTGIPISVNP
SANFPVR
>Mature_246_residues
SIPLLEYKPSSQNQRVPGYEVPNEDTPRIYRIEDAAYDSELKEIIWATYRQVFSEHVILKFFRQGNLESQLKNRAISVRD
FVRGLAKSEAFKTLVIKSNSNYRLVELALKRLLGRAPYNKDEEIAWSIKIATNGWDGFVDALLDSEEYQSNFGENIVPYQ
RRRYKDRPFNLVTPRYGNYWRDKLESERYIEGDIKNFLELAKSIEIKTVTFTPVSTANINIPDTTRNTTPTGIPISVNPS
ANFPVR

Specific function: Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PBS-linker domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001297
- InterPro:   IPR016470
- ProDom:   PD000852 [H]

Pfam domain/function: PF00427 PBS_linker_poly [H]

EC number: NA

Molecular weight: Translated: 28638; Mature: 28506

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIPLLEYKPSSQNQRVPGYEVPNEDTPRIYRIEDAAYDSELKEIIWATYRQVFSEHVIL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
KFFRQGNLESQLKNRAISVRDFVRGLAKSEAFKTLVIKSNSNYRLVELALKRLLGRAPYN
HHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHCCCCCC
KDEEIAWSIKIATNGWDGFVDALLDSEEYQSNFGENIVPYQRRRYKDRPFNLVTPRYGNY
CCCCEEEEEEEEECCCHHHHHHHHCCHHHHHHCCCCCCCHHHHHCCCCCCEEECCCCCCH
WRDKLESERYIEGDIKNFLELAKSIEIKTVTFTPVSTANINIPDTTRNTTPTGIPISVNP
HHHHHCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCEEECCCCCCCCCCCCCEEEECC
SANFPVR
CCCCCCC
>Mature Secondary Structure 
SIPLLEYKPSSQNQRVPGYEVPNEDTPRIYRIEDAAYDSELKEIIWATYRQVFSEHVIL
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
KFFRQGNLESQLKNRAISVRDFVRGLAKSEAFKTLVIKSNSNYRLVELALKRLLGRAPYN
HHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHCCCCCC
KDEEIAWSIKIATNGWDGFVDALLDSEEYQSNFGENIVPYQRRRYKDRPFNLVTPRYGNY
CCCCEEEEEEEEECCCHHHHHHHHCCHHHHHHCCCCCCCHHHHHCCCCCCEEECCCCCCH
WRDKLESERYIEGDIKNFLELAKSIEIKTVTFTPVSTANINIPDTTRNTTPTGIPISVNP
HHHHHCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCEEECCCCCCCCCCCCCEEEECC
SANFPVR
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1743523; 11759840 [H]