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The map label for this gene is cpcG4 [H]

Identifier: 75909149

GI number: 75909149

Start: 3642802

End: 3643563

Strand: Direct

Name: cpcG4 [H]

Synonym: Ava_2939

Alternate gene names: 75909149

Gene position: 3642802-3643563 (Clockwise)

Preceding gene: 75909148

Following gene: 75909152

Centisome position: 57.23

GC content: 44.49

Gene sequence:

>762_bases
ATGGCATTGCCATTACTCCAATACAAACCAAGCTCTCAAAATCACCGGGTTGCCAGCTTTGGTGCGGCTGACCAAAATGA
AGATACACCATACATCTATCGTATAGAAGATGTCAGCTCATACACTGATATTCAAAACATCATTTGGGCTTCCTATCGCC
AAGTCTTCAGCGAACATGAAATCCTCAAATTCAACCGCCAAAAAACTCTGGAATCCCAGGTGAAGAACGGTTCTATTTCC
GTCAGAGATTTCATTCGTGGTTTAGCTAAGTCTGAAGCTTTTTACCGTTTAGTAGTCTCAGTTAACAACAACTACCGCCT
AGTTGACATCACTCTCAAGCGCCTGTTGGGTCGTTCTTCCTACAATAAAGACGAGCAAATTGCTTGGTCTATTGTTATCG
GAACCAAAGGTTTTAGCGGTTTTGTTGATGCACTCATCGACAGTGAAGAGTACACCAAGAACTTTGGCGAAAACATCGTA
CCTTACCAACGCAAACGGATGGAAGGTCGCCCCTACAACTTGGTAACACCACGCTACGGCGAAGACTTCCAAGAAAAAGC
AGGCACAGTTCAAACCGACTGGCGCTTTACCTTGGACAAATTCTACAGCCGCAAGTCCCAAGAAAAACAACTACGGGAAG
GCGACCCTCGGAAGTTTGCAGATTTAGCAGCTTCAGTTGGTAACCAAGGTAACTACGCACAAAGAATCTCTGCTTTTGAT
ATCGATTATCTAAATGCAGTGCCAAACCGTACCAGACGCTAA

Upstream 100 bases:

>100_bases
GGGAAAATAAGTAAAGCATGAAGGAGGATTTTGAGAAATCAAGCCTCTTTCAGTTAATAAAGCTAGCTGTTTAACTTTTT
AATAAGGGGAATAACTCAGC

Downstream 100 bases:

>100_bases
GATTTAAAATCTGAGTGTTGATAATTTGATACTGGGTCTAGTTTTTGCGTTGATGTGACGAAAAGTTAGCAATTTTTCTG
TTAGCTAGGCGTGACATTGG

Product: phycobilisome linker polypeptide

Products: NA

Alternate protein names: L-RC 29.2 [H]

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MALPLLQYKPSSQNHRVASFGAADQNEDTPYIYRIEDVSSYTDIQNIIWASYRQVFSEHEILKFNRQKTLESQVKNGSIS
VRDFIRGLAKSEAFYRLVVSVNNNYRLVDITLKRLLGRSSYNKDEQIAWSIVIGTKGFSGFVDALIDSEEYTKNFGENIV
PYQRKRMEGRPYNLVTPRYGEDFQEKAGTVQTDWRFTLDKFYSRKSQEKQLREGDPRKFADLAASVGNQGNYAQRISAFD
IDYLNAVPNRTRR

Sequences:

>Translated_253_residues
MALPLLQYKPSSQNHRVASFGAADQNEDTPYIYRIEDVSSYTDIQNIIWASYRQVFSEHEILKFNRQKTLESQVKNGSIS
VRDFIRGLAKSEAFYRLVVSVNNNYRLVDITLKRLLGRSSYNKDEQIAWSIVIGTKGFSGFVDALIDSEEYTKNFGENIV
PYQRKRMEGRPYNLVTPRYGEDFQEKAGTVQTDWRFTLDKFYSRKSQEKQLREGDPRKFADLAASVGNQGNYAQRISAFD
IDYLNAVPNRTRR
>Mature_252_residues
ALPLLQYKPSSQNHRVASFGAADQNEDTPYIYRIEDVSSYTDIQNIIWASYRQVFSEHEILKFNRQKTLESQVKNGSISV
RDFIRGLAKSEAFYRLVVSVNNNYRLVDITLKRLLGRSSYNKDEQIAWSIVIGTKGFSGFVDALIDSEEYTKNFGENIVP
YQRKRMEGRPYNLVTPRYGEDFQEKAGTVQTDWRFTLDKFYSRKSQEKQLREGDPRKFADLAASVGNQGNYAQRISAFDI
DYLNAVPNRTRR

Specific function: Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PBS-linker domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001297
- InterPro:   IPR016470
- ProDom:   PD000852 [H]

Pfam domain/function: PF00427 PBS_linker_poly [H]

EC number: NA

Molecular weight: Translated: 29333; Mature: 29202

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALPLLQYKPSSQNHRVASFGAADQNEDTPYIYRIEDVSSYTDIQNIIWASYRQVFSEHE
CCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCHH
ILKFNRQKTLESQVKNGSISVRDFIRGLAKSEAFYRLVVSVNNNYRLVDITLKRLLGRSS
HHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCEEEEEEEECCCEEEEHHHHHHHHCCCC
YNKDEQIAWSIVIGTKGFSGFVDALIDSEEYTKNFGENIVPYQRKRMEGRPYNLVTPRYG
CCCCCCEEEEEEEECCCHHHHHHHHHCCHHHHHHHCCCCCCHHHHHCCCCCCEECCCCCC
EDFQEKAGTVQTDWRFTLDKFYSRKSQEKQLREGDPRKFADLAASVGNQGNYAQRISAFD
CCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHC
IDYLNAVPNRTRR
CHHHHHCCCCCCC
>Mature Secondary Structure 
ALPLLQYKPSSQNHRVASFGAADQNEDTPYIYRIEDVSSYTDIQNIIWASYRQVFSEHE
CCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCHH
ILKFNRQKTLESQVKNGSISVRDFIRGLAKSEAFYRLVVSVNNNYRLVDITLKRLLGRSS
HHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCEEEEEEEECCCEEEEHHHHHHHHCCCC
YNKDEQIAWSIVIGTKGFSGFVDALIDSEEYTKNFGENIVPYQRKRMEGRPYNLVTPRYG
CCCCCCEEEEEEEECCCHHHHHHHHHCCHHHHHHHCCCCCCHHHHHCCCCCCEECCCCCC
EDFQEKAGTVQTDWRFTLDKFYSRKSQEKQLREGDPRKFADLAASVGNQGNYAQRISAFD
CCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHC
IDYLNAVPNRTRR
CHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1743523; 11759840 [H]