Click here to switch to the map view.

The map label for this gene is cpcE [H]

Identifier: 75909144

GI number: 75909144

Start: 3638700

End: 3639530

Strand: Direct

Name: cpcE [H]

Synonym: Ava_2934

Alternate gene names: 75909144

Gene position: 3638700-3639530 (Clockwise)

Preceding gene: 75909143

Following gene: 75909145

Centisome position: 57.16

GC content: 48.13

Gene sequence:

>831_bases
ATGATAGAACCCAGTGTGGAAGAATTTCCCGCAGACAACGGGCCACAGCTAACACCAGAACTAGCCATAGCTAATCTGCA
ATCATCAGACTTAAGTCTCCGCTATTATGCTGCTTGGTGGATAGGCAAGTATCGGGTGAAGGAAGGTGCTGCTGTTGATG
GTTTAATTGCAGCCTTAGAGGATGAAGCCGATAGAACTGAACTTGGTGGTTATCCTTTGCGGCGCAATGCAGCCAGGGCA
TTAGGGAAATTGGGCGATCGTAAAGCCGTACCAGGCTTAATTAAGTGCTTGGATTGTCCTGACTTTTACGTGCGTGAAGC
AGCAGCCCAATCTCTGGAAATGCTCAAAGATAAAGCAGCAGCACCAGCACTCATCAAATTACTGGATGGGGGAGTCGCAC
AGGCCGTGCAAGTAACAGGGCGACCTCATCTAGTCCAACCCTACGAAGCAGTATTAGAAGCGTTAGGAGCTATTGGTGCT
ACTGATGCCATTCCTCTGATTCAGCCATTTCTAAAGCATCCAGTCTCACGAGTGCAGTGCGCCGCAGCTAGAGCAATGTA
TCAACTGACACAAGAACCAGTATATGGAGAGCTGCTGGTAAAAGTGTTAGAAGGTAATGACCTCAACCTACGACGAGTTG
CTTTGGGAGATTTGGGTGCAATTGGATACTTGGCAGCAGCAGAAGCGATCGCCAACGCCAAAGCCGAAAACAGCTTCAAA
CTCATAGCCCTCAAAGGATTGCTAGAACATCAGATGTCAGCAGAGTCAAACGCCCTCTCAATATCTGATCAAGCTATCCG
GGTCATGAAGCTCATGGATTCATTGTTGTAG

Upstream 100 bases:

>100_bases
AGCCGGATGAACGAAGAATACCAACGGATTACCCGTTTGGGTGGCAAAATCGTCAAGATTGAGCAATTGGTTTCCACAGA
GGCATAACAGCGCCCTGGTA

Downstream 100 bases:

>100_bases
TCAATAGTCCGTAGTCCATAGTCCGTAGTCCATAGTAGTTGACTATTGACCATTGACTATTGACTGTTGACTATTAACTA
TTAAACGTTGACTAATGACT

Product: HEAT repeat-containing PBS lyase

Products: NA

Alternate protein names: Phycocyanin operon protein CpcE [H]

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MIEPSVEEFPADNGPQLTPELAIANLQSSDLSLRYYAAWWIGKYRVKEGAAVDGLIAALEDEADRTELGGYPLRRNAARA
LGKLGDRKAVPGLIKCLDCPDFYVREAAAQSLEMLKDKAAAPALIKLLDGGVAQAVQVTGRPHLVQPYEAVLEALGAIGA
TDAIPLIQPFLKHPVSRVQCAAARAMYQLTQEPVYGELLVKVLEGNDLNLRRVALGDLGAIGYLAAAEAIANAKAENSFK
LIALKGLLEHQMSAESNALSISDQAIRVMKLMDSLL

Sequences:

>Translated_276_residues
MIEPSVEEFPADNGPQLTPELAIANLQSSDLSLRYYAAWWIGKYRVKEGAAVDGLIAALEDEADRTELGGYPLRRNAARA
LGKLGDRKAVPGLIKCLDCPDFYVREAAAQSLEMLKDKAAAPALIKLLDGGVAQAVQVTGRPHLVQPYEAVLEALGAIGA
TDAIPLIQPFLKHPVSRVQCAAARAMYQLTQEPVYGELLVKVLEGNDLNLRRVALGDLGAIGYLAAAEAIANAKAENSFK
LIALKGLLEHQMSAESNALSISDQAIRVMKLMDSLL
>Mature_276_residues
MIEPSVEEFPADNGPQLTPELAIANLQSSDLSLRYYAAWWIGKYRVKEGAAVDGLIAALEDEADRTELGGYPLRRNAARA
LGKLGDRKAVPGLIKCLDCPDFYVREAAAQSLEMLKDKAAAPALIKLLDGGVAQAVQVTGRPHLVQPYEAVLEALGAIGA
TDAIPLIQPFLKHPVSRVQCAAARAMYQLTQEPVYGELLVKVLEGNDLNLRRVALGDLGAIGYLAAAEAIANAKAENSFK
LIALKGLLEHQMSAESNALSISDQAIRVMKLMDSLL

Specific function: Required for the chromophorylation of the CpcA gene product [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpcE/RpcE/PecE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011989
- InterPro:   IPR016024
- InterPro:   IPR004155 [H]

Pfam domain/function: PF03130 HEAT_PBS [H]

EC number: 4.-.-.-

Molecular weight: Translated: 29613; Mature: 29613

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEPSVEEFPADNGPQLTPELAIANLQSSDLSLRYYAAWWIGKYRVKEGAAVDGLIAALE
CCCCCHHHCCCCCCCCCCHHHHHHCCCCCCCEEEEEEEHHHHHHHCCCCCHHHHHHHHHH
DEADRTELGGYPLRRNAARALGKLGDRKAVPGLIKCLDCPDFYVREAAAQSLEMLKDKAA
CCCCHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
APALIKLLDGGVAQAVQVTGRPHLVQPYEAVLEALGAIGATDAIPLIQPFLKHPVSRVQC
HHHHHHHHCCCHHHHHHCCCCCCEECHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHHHH
AAARAMYQLTQEPVYGELLVKVLEGNDLNLRRVALGDLGAIGYLAAAEAIANAKAENSFK
HHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEHHCCCHHHHHHHHHHHHHHCCCCCCEE
LIALKGLLEHQMSAESNALSISDQAIRVMKLMDSLL
EEHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHC
>Mature Secondary Structure
MIEPSVEEFPADNGPQLTPELAIANLQSSDLSLRYYAAWWIGKYRVKEGAAVDGLIAALE
CCCCCHHHCCCCCCCCCCHHHHHHCCCCCCCEEEEEEEHHHHHHHCCCCCHHHHHHHHHH
DEADRTELGGYPLRRNAARALGKLGDRKAVPGLIKCLDCPDFYVREAAAQSLEMLKDKAA
CCCCHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
APALIKLLDGGVAQAVQVTGRPHLVQPYEAVLEALGAIGATDAIPLIQPFLKHPVSRVQC
HHHHHHHHCCCHHHHHHCCCCCCEECHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHHHH
AAARAMYQLTQEPVYGELLVKVLEGNDLNLRRVALGDLGAIGYLAAAEAIANAKAENSFK
HHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEHHCCCHHHHHHHHHHHHHHCCCCCCEE
LIALKGLLEHQMSAESNALSISDQAIRVMKLMDSLL
EEHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3109890; 11237320; 11759840 [H]