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The map label for this gene is cpcF [H]

Identifier: 75909145

GI number: 75909145

Start: 3639625

End: 3640227

Strand: Direct

Name: cpcF [H]

Synonym: Ava_2935

Alternate gene names: 75909145

Gene position: 3639625-3640227 (Clockwise)

Preceding gene: 75909144

Following gene: 75909146

Centisome position: 57.18

GC content: 47.1

Gene sequence:

>603_bases
ATGACTGATGAACTAATTAATGGCGTTGCTCTGGCGGATACACCAGAGAAACTGGTAAAAGCAGTACAGGAATTGGCACT
AGCCAAAGATGTAGCTGCAATTCCCACTTTAATAGCTGTGTTTGGTTATAACAACCCAACGGCAGCAGCAATCGCCTCTA
CTGCCTTGGTGCAGATGGGAGAAGTAGCAGTCCCCCATTTACTCACTCAAATAGATGACTATAACTATGGCGCACGGGCT
TATTCGATTCGCACACTCGCGGCGATCGCTGATCCCCGTGCTTTAGATGTATTAATCGATGCTGCTGCTACAGACTTTGC
TCCTAGTGTCCGCCGGGCTGCGGCTAAAGGATTAGGGAACTTACATTGGCACAAGCTAGATTTTCCCGACAACCAAACAG
CACCCAAAAAAGCCTTGGAAACACTGCTGTTTATTTCTCAAGATGCAGAATGGTCGATTCGCTATGCAGCGATCGTCGGT
CTGCAAGGTTTAGTAAACATACCCGATTTACAACAGCCCATCCATACTAGACTCAAAGAAATGCTGGTAACTGATACCGA
AAAGGCAGTCCGCGCCCGCATTCTATTGGCTCAAAGTCAATAG

Upstream 100 bases:

>100_bases
TTGTAGTCAATAGTCCGTAGTCCATAGTCCGTAGTCCATAGTAGTTGACTATTGACCATTGACTATTGACTGTTGACTAT
TAACTATTAAACGTTGACTA

Downstream 100 bases:

>100_bases
TTGAATTGAGTTTCATAAGAAAAGGTGAAAGTAAAAATGTCAATACCTCTGCTGGAATATGCACCTTCTTCACAAAACCA
ACGTGTAGAAGGTTACGAAG

Product: HEAT repeat-containing PBS lyase

Products: NA

Alternate protein names: Phycocyanin operon protein CpcF [H]

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MTDELINGVALADTPEKLVKAVQELALAKDVAAIPTLIAVFGYNNPTAAAIASTALVQMGEVAVPHLLTQIDDYNYGARA
YSIRTLAAIADPRALDVLIDAAATDFAPSVRRAAAKGLGNLHWHKLDFPDNQTAPKKALETLLFISQDAEWSIRYAAIVG
LQGLVNIPDLQQPIHTRLKEMLVTDTEKAVRARILLAQSQ

Sequences:

>Translated_200_residues
MTDELINGVALADTPEKLVKAVQELALAKDVAAIPTLIAVFGYNNPTAAAIASTALVQMGEVAVPHLLTQIDDYNYGARA
YSIRTLAAIADPRALDVLIDAAATDFAPSVRRAAAKGLGNLHWHKLDFPDNQTAPKKALETLLFISQDAEWSIRYAAIVG
LQGLVNIPDLQQPIHTRLKEMLVTDTEKAVRARILLAQSQ
>Mature_199_residues
TDELINGVALADTPEKLVKAVQELALAKDVAAIPTLIAVFGYNNPTAAAIASTALVQMGEVAVPHLLTQIDDYNYGARAY
SIRTLAAIADPRALDVLIDAAATDFAPSVRRAAAKGLGNLHWHKLDFPDNQTAPKKALETLLFISQDAEWSIRYAAIVGL
QGLVNIPDLQQPIHTRLKEMLVTDTEKAVRARILLAQSQ

Specific function: Required for the chromophorylation of the CpcA gene product [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpcE/RpcE/PecE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011989
- InterPro:   IPR016024
- InterPro:   IPR004155 [H]

Pfam domain/function: PF03130 HEAT_PBS [H]

EC number: 4.-.-.-

Molecular weight: Translated: 21574; Mature: 21443

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDELINGVALADTPEKLVKAVQELALAKDVAAIPTLIAVFGYNNPTAAAIASTALVQMG
CCCHHHCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
EVAVPHLLTQIDDYNYGARAYSIRTLAAIADPRALDVLIDAAATDFAPSVRRAAAKGLGN
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCC
LHWHKLDFPDNQTAPKKALETLLFISQDAEWSIRYAAIVGLQGLVNIPDLQQPIHTRLKE
CCEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCCCCHHHHHHHHHH
MLVTDTEKAVRARILLAQSQ
HHHCCHHHHHHHHHHEECCC
>Mature Secondary Structure 
TDELINGVALADTPEKLVKAVQELALAKDVAAIPTLIAVFGYNNPTAAAIASTALVQMG
CCHHHCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
EVAVPHLLTQIDDYNYGARAYSIRTLAAIADPRALDVLIDAAATDFAPSVRRAAAKGLGN
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCC
LHWHKLDFPDNQTAPKKALETLLFISQDAEWSIRYAAIVGLQGLVNIPDLQQPIHTRLKE
CCEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCCCCHHHHHHHHHH
MLVTDTEKAVRARILLAQSQ
HHHCCHHHHHHHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11237320; 11759840; 1743523 [H]