Click here to switch to the map view.

The map label for this gene is cpcD [H]

Identifier: 75909143

GI number: 75909143

Start: 3638444

End: 3638686

Strand: Direct

Name: cpcD [H]

Synonym: Ava_2933

Alternate gene names: 75909143

Gene position: 3638444-3638686 (Clockwise)

Preceding gene: 75909142

Following gene: 75909144

Centisome position: 57.16

GC content: 45.68

Gene sequence:

>243_bases
ATGTTCGGTCAAACCACACTTGGGGCTGGTAGCGTTTCTTCTTCTGCTAGTCGAGTATTTCGCTACGAAGTCGTAGGCTT
GCGGCAAAGCTCAGAAACAGACAAAAACAAATACAATATCCGCAATAGCGGTAGTGTGTTTATCACAGTGCCATACAGCC
GGATGAACGAAGAATACCAACGGATTACCCGTTTGGGTGGCAAAATCGTCAAGATTGAGCAATTGGTTTCCACAGAGGCA
TAA

Upstream 100 bases:

>100_bases
CATTAGTTAGTAGTCAGGATTCAAACAACTGACAACTAGCAACTGACAACTAACACGCGACAGCGCTATAAAACTTACAA
CAATAGGAGATAGAGAAGTA

Downstream 100 bases:

>100_bases
CAGCGCCCTGGTAATGATAGAACCCAGTGTGGAAGAATTTCCCGCAGACAACGGGCCACAGCTAACACCAGAACTAGCCA
TAGCTAATCTGCAATCATCA

Product: CpcD phycobilisome linker-like protein

Products: NA

Alternate protein names: L-8.9/R; Rod-capping linker protein [H]

Number of amino acids: Translated: 80; Mature: 80

Protein sequence:

>80_residues
MFGQTTLGAGSVSSSASRVFRYEVVGLRQSSETDKNKYNIRNSGSVFITVPYSRMNEEYQRITRLGGKIVKIEQLVSTEA

Sequences:

>Translated_80_residues
MFGQTTLGAGSVSSSASRVFRYEVVGLRQSSETDKNKYNIRNSGSVFITVPYSRMNEEYQRITRLGGKIVKIEQLVSTEA
>Mature_80_residues
MFGQTTLGAGSVSSSASRVFRYEVVGLRQSSETDKNKYNIRNSGSVFITVPYSRMNEEYQRITRLGGKIVKIEQLVSTEA

Specific function: Rod linker protein, associated with phycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a d

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=This protein occurs in the rod, it is associated with phycocyanin (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cpcD-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008213 [H]

Pfam domain/function: PF01383 CpcD [H]

EC number: NA

Molecular weight: Translated: 8925; Mature: 8925

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGQTTLGAGSVSSSASRVFRYEVVGLRQSSETDKNKYNIRNSGSVFITVPYSRMNEEYQ
CCCCCCCCCCCCCCCHHHEEHEEEEECCCCCCCCCCCEEECCCCCEEEEECHHHCCHHHH
RITRLGGKIVKIEQLVSTEA
HHHHHCCCEEEHHHHHCCCC
>Mature Secondary Structure
MFGQTTLGAGSVSSSASRVFRYEVVGLRQSSETDKNKYNIRNSGSVFITVPYSRMNEEYQ
CCCCCCCCCCCCCCCHHHEEHEEEEECCCCCCCCCCCEEECCCCCEEEEECHHHCCHHHH
RITRLGGKIVKIEQLVSTEA
HHHHHCCCEEEHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3109890; 11237320; 11759840 [H]