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The map label for this gene is ccmH [H]

Identifier: 75675387

GI number: 75675387

Start: 1300671

End: 1301234

Strand: Direct

Name: ccmH [H]

Synonym: Nwi_1194

Alternate gene names: 75675387

Gene position: 1300671-1301234 (Clockwise)

Preceding gene: 75675386

Following gene: 75675388

Centisome position: 38.23

GC content: 64.89

Gene sequence:

>564_bases
ATGCGTGAACTCGTACAAACCCTGTCGTCGTTGTGCGGACGGTGCATGGCGTGGAACAGGTTCCTGCCTGTTCTCGGCGC
GATCCTTTGTTTTGGGCTCTTGGCGGTGTCTTCCGCTCATGCGGTGCAGCCGGACGAGGTCATGACCGACCCCGCTCAGG
AAGCGCGCGCGCGCGACCTGTCGCGCGGGTTGCGCTGCATGGTGTGCCAGAACCAGTCGATCGACGATTCCTCGGCGCCG
CTGGCGCGGGATCTCCGTCTGCTGGTGCGGGAGCGGATCGCCGCCGGCGACAGCAATCAGCAGGTGCTAGATTTTCTGGT
GGCCCGTTATGGCGACTACGTTCTGCTGAAGCCGCCTTTTGAGACGAGTACGCTGCCGCTCTGGCTTCTGACTCCGCTGC
TTCTGGCCGGCGGCGGACTGGCGCTGTGGGGATACAGCCGGCGGCGGTCAAAAGCGGTGAAGGCCGCTCAGGAGGCTCCA
CCGCGTTTGAGCGAGGAAGAAGAAGCCCGGCTCGCGAAACTGGTGGCGATCGAACGCGCCGCCGGCGAGGAGTCGAAGGC
TTGA

Upstream 100 bases:

>100_bases
GGCGGCGTGCTGTCGCTGTCAGACCGGCGCTTGCGGGTCGGTGCGCCGAAACCGGCGAAGGCCGGCTGGCGCACGCTCCA
GCCGGCGGAGTAAGGCTGCC

Downstream 100 bases:

>100_bases
GCCGATAACCGGTTTTCGATCCGCGACCTCGTGATGTGTGCGCCAAACCGCCGCACGAGGCGTTTGCTGTTGTTACGAAA
CATTAATTTCTTGGTCAGCG

Product: cytochrome C biogenesis protein

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycL [H]

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MRELVQTLSSLCGRCMAWNRFLPVLGAILCFGLLAVSSAHAVQPDEVMTDPAQEARARDLSRGLRCMVCQNQSIDDSSAP
LARDLRLLVRERIAAGDSNQQVLDFLVARYGDYVLLKPPFETSTLPLWLLTPLLLAGGGLALWGYSRRRSKAVKAAQEAP
PRLSEEEEARLAKLVAIERAAGEESKA

Sequences:

>Translated_187_residues
MRELVQTLSSLCGRCMAWNRFLPVLGAILCFGLLAVSSAHAVQPDEVMTDPAQEARARDLSRGLRCMVCQNQSIDDSSAP
LARDLRLLVRERIAAGDSNQQVLDFLVARYGDYVLLKPPFETSTLPLWLLTPLLLAGGGLALWGYSRRRSKAVKAAQEAP
PRLSEEEEARLAKLVAIERAAGEESKA
>Mature_187_residues
MRELVQTLSSLCGRCMAWNRFLPVLGAILCFGLLAVSSAHAVQPDEVMTDPAQEARARDLSRGLRCMVCQNQSIDDSSAP
LARDLRLLVRERIAAGDSNQQVLDFLVARYGDYVLLKPPFETSTLPLWLLTPLLLAGGGLALWGYSRRRSKAVKAAQEAP
PRLSEEEEARLAKLVAIERAAGEESKA

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=124, Percent_Identity=38.7096774193548, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 20504; Mature: 20504

Theoretical pI: Translated: 7.83; Mature: 7.83

Prosite motif: PS00228 TUBULIN_B_AUTOREG ; PS00237 G_PROTEIN_RECEP_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRELVQTLSSLCGRCMAWNRFLPVLGAILCFGLLAVSSAHAVQPDEVMTDPAQEARARDL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHH
SRGLRCMVCQNQSIDDSSAPLARDLRLLVRERIAAGDSNQQVLDFLVARYGDYVLLKPPF
HHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEECCCC
ETSTLPLWLLTPLLLAGGGLALWGYSRRRSKAVKAAQEAPPRLSEEEEARLAKLVAIERA
CCCCCHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
AGEESKA
CCCCCCC
>Mature Secondary Structure
MRELVQTLSSLCGRCMAWNRFLPVLGAILCFGLLAVSSAHAVQPDEVMTDPAQEARARDL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHH
SRGLRCMVCQNQSIDDSSAPLARDLRLLVRERIAAGDSNQQVLDFLVARYGDYVLLKPPF
HHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEECCCC
ETSTLPLWLLTPLLLAGGGLALWGYSRRRSKAVKAAQEAPPRLSEEEEARLAKLVAIERA
CCCCCHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
AGEESKA
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7715601; 12597275 [H]