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The map label for this gene is secB

Identifier: 74318420

GI number: 74318420

Start: 2474912

End: 2475370

Strand: Direct

Name: secB

Synonym: Tbd_2402

Alternate gene names: 74318420

Gene position: 2474912-2475370 (Clockwise)

Preceding gene: 74318419

Following gene: 74318421

Centisome position: 85.05

GC content: 60.35

Gene sequence:

>459_bases
ATGAGCGACGCGCAGCAGCCCGTATTCAACATCGAGAAACTCTACGTCAAGGATTTGTCGGTCGAGGTTCCGAATGCCCC
CGCCGTCTACCTCGAACGCGAAGCGCCGCAGATGGAAGTCAACATGTCGACCGAAAGCCGCGCGCTCAACGAAGACATGT
ATCACAGCAGCATCACGGTGACGGTCACGGCGAAGCTCGGCGACAAGACGATGTTCCTCGTCGAATGTACGCAAGCCGGC
ATCTTCCGCATCCAGAACGTACCCCAGGACCAGATGCCGATGGTCCTCGGCATCGGCTGCCCGAACATCGTTTTCCCCTA
TCTCAGGGAGACCGTGTCCGACGTCGTGATCCGCGCGGGCTTCCCGCCTCTGCTCCTGAACCCGGTCAACTTCGAAGCCA
TTTTCGTGCAGCAACAGCAGGCCCAGCAGCAACAGGCGGGCGCCGCGCAGACGCATTGA

Upstream 100 bases:

>100_bases
ATGCGCTGAAACGCTGGCTCGCGGCGCAAGGGATTCGATAGCGCGTTAAAATAAGCCTTCCGGAGCCTGCGGCTCCGGTT
TTCTTATTCAGGGGGAGACC

Downstream 100 bases:

>100_bases
GCGGGATCCCGAATTTGCGAATACCGCGCCCCGCGCCGCTTTTCCTGGGCAGCCTGTTGCTGCTCGGCAACCCGGCCGCG
AATGCCCTCGACTTTCGCAC

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 151

Protein sequence:

>152_residues
MSDAQQPVFNIEKLYVKDLSVEVPNAPAVYLEREAPQMEVNMSTESRALNEDMYHSSITVTVTAKLGDKTMFLVECTQAG
IFRIQNVPQDQMPMVLGIGCPNIVFPYLRETVSDVVIRAGFPPLLLNPVNFEAIFVQQQQAQQQQAGAAQTH

Sequences:

>Translated_152_residues
MSDAQQPVFNIEKLYVKDLSVEVPNAPAVYLEREAPQMEVNMSTESRALNEDMYHSSITVTVTAKLGDKTMFLVECTQAG
IFRIQNVPQDQMPMVLGIGCPNIVFPYLRETVSDVVIRAGFPPLLLNPVNFEAIFVQQQQAQQQQAGAAQTH
>Mature_151_residues
SDAQQPVFNIEKLYVKDLSVEVPNAPAVYLEREAPQMEVNMSTESRALNEDMYHSSITVTVTAKLGDKTMFLVECTQAGI
FRIQNVPQDQMPMVLGIGCPNIVFPYLRETVSDVVIRAGFPPLLLNPVNFEAIFVQQQQAQQQQAGAAQTH

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=140, Percent_Identity=45.7142857142857, Blast_Score=130, Evalue=4e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_THIDA (Q3SG95)

Other databases:

- EMBL:   CP000116
- RefSeq:   YP_316160.1
- ProteinModelPortal:   Q3SG95
- SMR:   Q3SG95
- STRING:   Q3SG95
- GeneID:   3672282
- GenomeReviews:   CP000116_GR
- KEGG:   tbd:Tbd_2402
- NMPDR:   fig|292415.3.peg.2475
- eggNOG:   COG1952
- HOGENOM:   HBG294212
- OMA:   GFPPLMI
- PhylomeDB:   Q3SG95
- ProtClustDB:   PRK05751
- BioCyc:   TDEN292415:TBD_2402-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 16927; Mature: 16795

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDAQQPVFNIEKLYVKDLSVEVPNAPAVYLEREAPQMEVNMSTESRALNEDMYHSSITV
CCCCCCCHHHHHHEEEEECEEECCCCCEEEEECCCCCEEEECCCHHHHHCHHHCCCEEEE
TVTAKLGDKTMFLVECTQAGIFRIQNVPQDQMPMVLGIGCPNIVFPYLRETVSDVVIRAG
EEEEECCCCEEEEEEECCCCEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCC
FPPLLLNPVNFEAIFVQQQQAQQQQAGAAQTH
CCCEEECCCCCEEEEEEHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SDAQQPVFNIEKLYVKDLSVEVPNAPAVYLEREAPQMEVNMSTESRALNEDMYHSSITV
CCCCCCHHHHHHEEEEECEEECCCCCEEEEECCCCCEEEECCCHHHHHCHHHCCCEEEE
TVTAKLGDKTMFLVECTQAGIFRIQNVPQDQMPMVLGIGCPNIVFPYLRETVSDVVIRAG
EEEEECCCCEEEEEEECCCCEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCC
FPPLLLNPVNFEAIFVQQQQAQQQQAGAAQTH
CCCEEECCCCCEEEEEEHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA