| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74318031
Identifier: 74318031
GI number: 74318031
Start: 2103236
End: 2104378
Strand: Direct
Name: 74318031
Synonym: Tbd_2013
Alternate gene names: NA
Gene position: 2103236-2104378 (Clockwise)
Preceding gene: 74318030
Following gene: 74318033
Centisome position: 72.28
GC content: 65.27
Gene sequence:
>1143_bases GTGCAACCGGCGTCAACGCGAGGCGTCAATCGTCTGTCATACTGCCCCGCCATACTCGGCGCGGCTTGCCCCTGCGGGCA AACCCGGTTACCGTTGTCGCAGATGGGCGATAAGCTAAAAATTCCGCCTCTGCGCCCGTCCTTCGCCAGCCAGCCCGACA TGCAGCCTCCCGAGCCCGTACCCGCCGCGCGCACCACCCTCCAGGAAAGCGTCGCCCATCAACGTGAGGCCCTCGCCAAC CTGCTGCGCGAACCGCTGGCCTTGGCGGCGCAGGCATGCAGCCGGGTATGGGCGAATCGTGCAGCGCTCAATGCGGCCCT GGGCCACGCGCTGGCGGACCTGCCCGCCTGCAAGTATCTGTACGCGCTCGACACCCGCGCGATCCAGCTTTCCGACAACA TCAGCCGCGAGGGCCTGATCGAGACGGACTACGGCCGCGATCGCTCCGACCGCCCCTACATGCGTGAAGCGGTGCCGAAC CAGGGCTTCCTGCTGTCTCAGGCCTACATTAGCCTGCGCGTCAAGCGCCCTTCGCTCACCGCGATCCAGATCGTGCGCGG CGAAGACGACAAAGCGCTCGGTTTCGTCGGCGCCGACTTCGACCTGCGTGACCTGCCGATCACCGCGAAGCTCTACGACG AGCCGACGTACTGGCGCCAGATCAAGGGCGACCCGGCGATTCGCGGCGCGGTCTTCCACCAGACGCGCAGCGAGAGCCAG ATGGATCTCCACGTCGACACCGTGCTCGGTGTGATGACCGAATTGATGGAGGACCACGGCGTCTTCCACGGCAAGCTGCA TTTCTCGAGCAGCCGCGCGACGGTCTGGCTCGTCGACGATCCCTACCGCTACCGTCTGCTCGACATCGACGCGCTGACCG ACCCCGACACCTGCCTGATCTACCCGCACCATCTCTATCCGGATGACGCGGTCGTGCCGAAGGACAAGATTCGCCCGGTG CTCGACAACCTGCGCGCCCTGCGTTTCATGGACGAAACCTTCTACCTGCGGGCCGGCTCGCTCAATATCTTCAATGGCAT GGTCGGCCTCACGTTCTCGTGCGACGGCTCGCACTACCTGCCGTGGGACGAGTTTCTGAGCAAAGGCTACGACTTCTGGG CGAGCGGCAGCACGCTCGGCTGA
Upstream 100 bases:
>100_bases CCGTTGAAGGGCGCCTCAACGGCAACCTGCCCGACGCTGTAAAAAAGCGTTGCCTCGCACGCCGAATCCGGCCCGGCGCA AGCCGGGATTTTCTTTTGAT
Downstream 100 bases:
>100_bases AACGGCCGCGCGGCGCCGCTTCAGGCCGCGACTTTAGGCTTCTTGGCAGCCGGATAGACCTGGATCGGCGCGGTCTTTTT CCTGCCGCGCCCCCCTCCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 380; Mature: 380
Protein sequence:
>380_residues MQPASTRGVNRLSYCPAILGAACPCGQTRLPLSQMGDKLKIPPLRPSFASQPDMQPPEPVPAARTTLQESVAHQREALAN LLREPLALAAQACSRVWANRAALNAALGHALADLPACKYLYALDTRAIQLSDNISREGLIETDYGRDRSDRPYMREAVPN QGFLLSQAYISLRVKRPSLTAIQIVRGEDDKALGFVGADFDLRDLPITAKLYDEPTYWRQIKGDPAIRGAVFHQTRSESQ MDLHVDTVLGVMTELMEDHGVFHGKLHFSSSRATVWLVDDPYRYRLLDIDALTDPDTCLIYPHHLYPDDAVVPKDKIRPV LDNLRALRFMDETFYLRAGSLNIFNGMVGLTFSCDGSHYLPWDEFLSKGYDFWASGSTLG
Sequences:
>Translated_380_residues MQPASTRGVNRLSYCPAILGAACPCGQTRLPLSQMGDKLKIPPLRPSFASQPDMQPPEPVPAARTTLQESVAHQREALAN LLREPLALAAQACSRVWANRAALNAALGHALADLPACKYLYALDTRAIQLSDNISREGLIETDYGRDRSDRPYMREAVPN QGFLLSQAYISLRVKRPSLTAIQIVRGEDDKALGFVGADFDLRDLPITAKLYDEPTYWRQIKGDPAIRGAVFHQTRSESQ MDLHVDTVLGVMTELMEDHGVFHGKLHFSSSRATVWLVDDPYRYRLLDIDALTDPDTCLIYPHHLYPDDAVVPKDKIRPV LDNLRALRFMDETFYLRAGSLNIFNGMVGLTFSCDGSHYLPWDEFLSKGYDFWASGSTLG >Mature_380_residues MQPASTRGVNRLSYCPAILGAACPCGQTRLPLSQMGDKLKIPPLRPSFASQPDMQPPEPVPAARTTLQESVAHQREALAN LLREPLALAAQACSRVWANRAALNAALGHALADLPACKYLYALDTRAIQLSDNISREGLIETDYGRDRSDRPYMREAVPN QGFLLSQAYISLRVKRPSLTAIQIVRGEDDKALGFVGADFDLRDLPITAKLYDEPTYWRQIKGDPAIRGAVFHQTRSESQ MDLHVDTVLGVMTELMEDHGVFHGKLHFSSSRATVWLVDDPYRYRLLDIDALTDPDTCLIYPHHLYPDDAVVPKDKIRPV LDNLRALRFMDETFYLRAGSLNIFNGMVGLTFSCDGSHYLPWDEFLSKGYDFWASGSTLG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42408; Mature: 42408
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQPASTRGVNRLSYCPAILGAACPCGQTRLPLSQMGDKLKIPPLRPSFASQPDMQPPEPV CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHCCCEEECCCCCCCCCCCCCCCCCCCC PAARTTLQESVAHQREALANLLREPLALAAQACSRVWANRAALNAALGHALADLPACKYL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH YALDTRAIQLSDNISREGLIETDYGRDRSDRPYMREAVPNQGFLLSQAYISLRVKRPSLT EECCCEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHCCCCCEEEEEEEEEEEEECCCCE AIQIVRGEDDKALGFVGADFDLRDLPITAKLYDEPTYWRQIKGDPAIRGAVFHQTRSESQ EEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCCHHHHHCCCCCCHHHHHHHHCCCCCC MDLHVDTVLGVMTELMEDHGVFHGKLHFSSSRATVWLVDDPYRYRLLDIDALTDPDTCLI CEEHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEECCCCEEEEEEEECCCCCCEEEE YPHHLYPDDAVVPKDKIRPVLDNLRALRFMDETFYLRAGSLNIFNGMVGLTFSCDGSHYL EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCEEECCCEEEEEECCCCCCC PWDEFLSKGYDFWASGSTLG CHHHHHHCCCCEECCCCCCC >Mature Secondary Structure MQPASTRGVNRLSYCPAILGAACPCGQTRLPLSQMGDKLKIPPLRPSFASQPDMQPPEPV CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHCCCEEECCCCCCCCCCCCCCCCCCCC PAARTTLQESVAHQREALANLLREPLALAAQACSRVWANRAALNAALGHALADLPACKYL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH YALDTRAIQLSDNISREGLIETDYGRDRSDRPYMREAVPNQGFLLSQAYISLRVKRPSLT EECCCEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHCCCCCEEEEEEEEEEEEECCCCE AIQIVRGEDDKALGFVGADFDLRDLPITAKLYDEPTYWRQIKGDPAIRGAVFHQTRSESQ EEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCCHHHHHCCCCCCHHHHHHHHCCCCCC MDLHVDTVLGVMTELMEDHGVFHGKLHFSSSRATVWLVDDPYRYRLLDIDALTDPDTCLI CEEHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEECCCCEEEEEEEECCCCCCEEEE YPHHLYPDDAVVPKDKIRPVLDNLRALRFMDETFYLRAGSLNIFNGMVGLTFSCDGSHYL EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCEEECCCEEEEEECCCCCCC PWDEFLSKGYDFWASGSTLG CHHHHHHCCCCEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA