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The map label for this gene is rnfA [H]

Identifier: 74318033

GI number: 74318033

Start: 2105103

End: 2105678

Strand: Direct

Name: rnfA [H]

Synonym: Tbd_2015

Alternate gene names: 74318033

Gene position: 2105103-2105678 (Clockwise)

Preceding gene: 74318031

Following gene: 74318034

Centisome position: 72.35

GC content: 59.55

Gene sequence:

>576_bases
GTGGAAACCTATATCCTCATTCTCATCTCCACGGTGTTCGTGAACAACATCGTGATGGCCAAGATTCTCGGCTTGTGTCC
CTTCATGGGGGTGTCGAAGAAACTCGAAACGGCGATCGGCATGGGGCTCGCGACCACCTTCGTGCTGACGCTGGCCTCGG
GGTCGAGCTACCTGATCAACGAATACCTGCTCGGCACCGACCTGTTCTATCTGCGCACGCTGTCCTTCATCGTCGTGATT
GCGGGCATCGTGCAGTTCACCGAGATGTTCATCCACAAGACGAGCCCGGTGCTGTATCAGGTACTCGGGATCTATCTCCC
GCTCATCACGACGAACTGCGCCGTGCTCGGAATTCCGCTCCTCAACGTCCAGGCGCAGAACGGCTTCGTCGAATCGCTGT
TCTTCGGCGCCGGCGGCGCGATCGGATTCACGCTCGTGCTGATCCTTTTCGCCGGCATCCGCGAGCGTCTCGACACCTGT
GACGTGCCTGCCCCGTTCAAGGGCACGAGCATCGCGATGGTCACCGCGGGACTGATGTCGCTCGCCTTCATGGGCTTCTC
GGGCCTGGTCAAGTAA

Upstream 100 bases:

>100_bases
GGCTTTCAAGGGGCCGGCTTCACGGGCCGGACGGCGCGCCGCCGCTTGAGTCGCGCGGCCTCCATGGCGGATAATACGAC
ACCCCCTCAGGCCGCACGTT

Downstream 100 bases:

>100_bases
TGTTCACCGCAATCTGGGTCATGGTCGGCCTGGCCATCGCGATCGGGCTGATACTCGGCTGGTCGGCGATCCGCTTCAAG
GTCGAGGGCAATCCGCTCGC

Product: RnfABCDGE type electron transport complex subunit A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
METYILILISTVFVNNIVMAKILGLCPFMGVSKKLETAIGMGLATTFVLTLASGSSYLINEYLLGTDLFYLRTLSFIVVI
AGIVQFTEMFIHKTSPVLYQVLGIYLPLITTNCAVLGIPLLNVQAQNGFVESLFFGAGGAIGFTLVLILFAGIRERLDTC
DVPAPFKGTSIAMVTAGLMSLAFMGFSGLVK

Sequences:

>Translated_191_residues
METYILILISTVFVNNIVMAKILGLCPFMGVSKKLETAIGMGLATTFVLTLASGSSYLINEYLLGTDLFYLRTLSFIVVI
AGIVQFTEMFIHKTSPVLYQVLGIYLPLITTNCAVLGIPLLNVQAQNGFVESLFFGAGGAIGFTLVLILFAGIRERLDTC
DVPAPFKGTSIAMVTAGLMSLAFMGFSGLVK
>Mature_191_residues
METYILILISTVFVNNIVMAKILGLCPFMGVSKKLETAIGMGLATTFVLTLASGSSYLINEYLLGTDLFYLRTLSFIVVI
AGIVQFTEMFIHKTSPVLYQVLGIYLPLITTNCAVLGIPLLNVQAQNGFVESLFFGAGGAIGFTLVLILFAGIRERLDTC
DVPAPFKGTSIAMVTAGLMSLAFMGFSGLVK

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4657

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787914, Length=192, Percent_Identity=65.625, Blast_Score=256, Evalue=6e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011293 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 20497; Mature: 20497

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METYILILISTVFVNNIVMAKILGLCPFMGVSKKLETAIGMGLATTFVLTLASGSSYLIN
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
EYLLGTDLFYLRTLSFIVVIAGIVQFTEMFIHKTSPVLYQVLGIYLPLITTNCAVLGIPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHCCEE
LNVQAQNGFVESLFFGAGGAIGFTLVLILFAGIRERLDTCDVPAPFKGTSIAMVTAGLMS
EEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
LAFMGFSGLVK
HHHHHHHHCCC
>Mature Secondary Structure
METYILILISTVFVNNIVMAKILGLCPFMGVSKKLETAIGMGLATTFVLTLASGSSYLIN
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
EYLLGTDLFYLRTLSFIVVIAGIVQFTEMFIHKTSPVLYQVLGIYLPLITTNCAVLGIPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHCCEE
LNVQAQNGFVESLFFGAGGAIGFTLVLILFAGIRERLDTCDVPAPFKGTSIAMVTAGLMS
EEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
LAFMGFSGLVK
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA