| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is hisD
Identifier: 74317731
GI number: 74317731
Start: 1800556
End: 1801860
Strand: Reverse
Name: hisD
Synonym: Tbd_1713
Alternate gene names: 74317731
Gene position: 1801860-1800556 (Counterclockwise)
Preceding gene: 74317734
Following gene: 74317730
Centisome position: 61.92
GC content: 69.5
Gene sequence:
>1305_bases GTGCTCACGCTTACCCGCCTCGACAGCGCCCAGCCTGACTTTCAGGCGCGTCTCGCCCGCCTGTTGCAGTTCGACGACGC CACCGATGCCTCGATCGAGGAGGCCGTTGCGACGATTCTGCACGCGGTCAAAACCCGCGGCGACGCGGCGGTGCTCGAAT ACACCGAGCGTTTCGACCGCCTGCCGGCGCCCTCGGCAGCCAGTCTCGAACTTGGCGCGGCGGAACTCGCGGCGGCCCTC GCGGGCTTGCCGGAAGACACGCGCGCGGCGCTCGAGGCCGCCGCGGACCGGGTGCGTCGCTACCACGAAAAACAGCTGCA GGGCTCGTGGACCTACACCGAAGACGACGGCACCGTGCTCGGGCAGAAGGTTACGCCGCTCGACCGCGTCGGGCTCTACG TACCCGGCGGCAAGGCCGCGTATCCCTCGTCGGTCCTGATGAACGCGATTCCGGCCAAGGTCGCCGGCGTCGCCGAACTC GTCATGGTCGTGCCGACGCCCGGCGGCGAGCGCAACGCGCTCGTGCTCGCGGCCGCGGCGATCGCCGGCGTCGACCGCGT GTTCACCATCGGCGGCGCGCAGGCGGTCGCGGCGCTGGCGTACGGCACCGAAACCGTGCCGCAGGTCGACAAGATCGTCG GCCCCGGCAACGCCTACGTGGCCGCGGCCAAGCGCCGCGTTTTCGGTACGGTCGGCATCGACATGATCGCCGGCCCGTCG GAAATCCTCGTGATCGCCGACGGCAGCACGCCGGCGGAGTGGGTGGCGATGGATCTCTTTTCGCAGGCCGAGCACGACGA ACTCGCACAGTCCATCCTGCTGTCGCCGGACCCGGACTATCTCGACGCGGTCGCCGCCGCGATCGACCAGCTCATCGTGG AGATGCCGCGCGCCGAGGTGATCCGCACCTCCTTGACCAATCGCGGCGCGCTGATCCGGACGCACGACCTCCACGACGCC GCGGCGATCGCCAACGCGATCGCGCCCGAGCACCTCGAGCTCGCGGTGAGCGACCCCGAGGCGCTGCTGCCGAAGCTGCG CCATGCCGGCGCGATCTTCATGGGCAAGAATACCTGCGAGGCGCTCGGCGATTACTGTGCGGGACCGAATCACGTCCTGC CGACCTCGCGTACTGCGCGCTTCTCGTCGCCTTTAGGCGTATACGACTTCCAGAAACGCACGAGCCTGATCCACGTGTCC GAGGCCGGCGCGCAGACGCTCGGCCGCATCGCCGCCACGCTCGCCTACGGCGAGGGGCTGCAGGCGCATGCGCGTTCCGC CGAATATCGCCTGACCCACAAATGA
Upstream 100 bases:
>100_bases TTGATCGGGCTCGGAAAACCCCGAACGGACGCCCATCCAGGGCAAAACGGGTACAATCCCGGTCGTACGTTTCGACAGCC TTCTAAAAGCAGAATCCCCC
Downstream 100 bases:
>100_bases GCCGTACGTCGACGAGCAGGTACTGGAGCGCCGTGGTCGGCGCGCTGACGCCCTATGTGCCGGGCGAACAGCCCAAGCTC GCCAATCTGGTCAAGCTCAA
Product: histidinol dehydrogenase
Products: NA
Alternate protein names: HDH
Number of amino acids: Translated: 434; Mature: 434
Protein sequence:
>434_residues MLTLTRLDSAQPDFQARLARLLQFDDATDASIEEAVATILHAVKTRGDAAVLEYTERFDRLPAPSAASLELGAAELAAAL AGLPEDTRAALEAAADRVRRYHEKQLQGSWTYTEDDGTVLGQKVTPLDRVGLYVPGGKAAYPSSVLMNAIPAKVAGVAEL VMVVPTPGGERNALVLAAAAIAGVDRVFTIGGAQAVAALAYGTETVPQVDKIVGPGNAYVAAAKRRVFGTVGIDMIAGPS EILVIADGSTPAEWVAMDLFSQAEHDELAQSILLSPDPDYLDAVAAAIDQLIVEMPRAEVIRTSLTNRGALIRTHDLHDA AAIANAIAPEHLELAVSDPEALLPKLRHAGAIFMGKNTCEALGDYCAGPNHVLPTSRTARFSSPLGVYDFQKRTSLIHVS EAGAQTLGRIAATLAYGEGLQAHARSAEYRLTHK
Sequences:
>Translated_434_residues MLTLTRLDSAQPDFQARLARLLQFDDATDASIEEAVATILHAVKTRGDAAVLEYTERFDRLPAPSAASLELGAAELAAAL AGLPEDTRAALEAAADRVRRYHEKQLQGSWTYTEDDGTVLGQKVTPLDRVGLYVPGGKAAYPSSVLMNAIPAKVAGVAEL VMVVPTPGGERNALVLAAAAIAGVDRVFTIGGAQAVAALAYGTETVPQVDKIVGPGNAYVAAAKRRVFGTVGIDMIAGPS EILVIADGSTPAEWVAMDLFSQAEHDELAQSILLSPDPDYLDAVAAAIDQLIVEMPRAEVIRTSLTNRGALIRTHDLHDA AAIANAIAPEHLELAVSDPEALLPKLRHAGAIFMGKNTCEALGDYCAGPNHVLPTSRTARFSSPLGVYDFQKRTSLIHVS EAGAQTLGRIAATLAYGEGLQAHARSAEYRLTHK >Mature_434_residues MLTLTRLDSAQPDFQARLARLLQFDDATDASIEEAVATILHAVKTRGDAAVLEYTERFDRLPAPSAASLELGAAELAAAL AGLPEDTRAALEAAADRVRRYHEKQLQGSWTYTEDDGTVLGQKVTPLDRVGLYVPGGKAAYPSSVLMNAIPAKVAGVAEL VMVVPTPGGERNALVLAAAAIAGVDRVFTIGGAQAVAALAYGTETVPQVDKIVGPGNAYVAAAKRRVFGTVGIDMIAGPS EILVIADGSTPAEWVAMDLFSQAEHDELAQSILLSPDPDYLDAVAAAIDQLIVEMPRAEVIRTSLTNRGALIRTHDLHDA AAIANAIAPEHLELAVSDPEALLPKLRHAGAIFMGKNTCEALGDYCAGPNHVLPTSRTARFSSPLGVYDFQKRTSLIHVS EAGAQTLGRIAATLAYGEGLQAHARSAEYRLTHK
Specific function: Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
COG id: COG0141
COG function: function code E; Histidinol dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the histidinol dehydrogenase family
Homologues:
Organism=Escherichia coli, GI1788331, Length=405, Percent_Identity=41.7283950617284, Blast_Score=285, Evalue=4e-78, Organism=Saccharomyces cerevisiae, GI6319819, Length=414, Percent_Identity=35.9903381642512, Blast_Score=246, Evalue=6e-66,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): HISX_THIDA (Q3SI67)
Other databases:
- EMBL: CP000116 - RefSeq: YP_315471.1 - ProteinModelPortal: Q3SI67 - SMR: Q3SI67 - STRING: Q3SI67 - GeneID: 3671296 - GenomeReviews: CP000116_GR - KEGG: tbd:Tbd_1713 - NMPDR: fig|292415.3.peg.1810 - eggNOG: COG0141 - HOGENOM: HBG329596 - OMA: LDAHKNA - ProtClustDB: PRK00877 - BioCyc: TDEN292415:TBD_1713-MONOMER - HAMAP: MF_01024 - InterPro: IPR016161 - InterPro: IPR022695 - InterPro: IPR001692 - InterPro: IPR012131 - PANTHER: PTHR21256:SF2 - PIRSF: PIRSF000099 - PRINTS: PR00083 - TIGRFAMs: TIGR00069
Pfam domain/function: PF00815 Histidinol_dh; SSF53720 Aldehyde_DH/Histidinol_DH
EC number: =1.1.1.23
Molecular weight: Translated: 45762; Mature: 45762
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: PS00611 HISOL_DEHYDROGENASE
Important sites: ACT_SITE 330-330 ACT_SITE 331-331 BINDING 133-133 BINDING 194-194 BINDING 217-217 BINDING 240-240 BINDING 262-262 BINDING 265-265 BINDING 331-331 BINDING 364-364 BINDING 418-418 BINDING 423-423
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTLTRLDSAQPDFQARLARLLQFDDATDASIEEAVATILHAVKTRGDAAVLEYTERFDR CEEEECCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC LPAPSAASLELGAAELAAALAGLPEDTRAALEAAADRVRRYHEKQLQGSWTYTEDDGTVL CCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEE GQKVTPLDRVGLYVPGGKAAYPSSVLMNAIPAKVAGVAELVMVVPTPGGERNALVLAAAA CCCCCCHHHCCEECCCCCCCCCHHHHHHHHHHHHHHHEEEEEEEECCCCCCCEEEEHHHH IAGVDRVFTIGGAQAVAALAYGTETVPQVDKIVGPGNAYVAAAKRRVFGTVGIDMIAGPS HHCCHHEEEECCHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHEECCHHEECCCC EILVIADGSTPAEWVAMDLFSQAEHDELAQSILLSPDPDYLDAVAAAIDQLIVEMPRAEV EEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHH IRTSLTNRGALIRTHDLHDAAAIANAIAPEHLELAVSDPEALLPKLRHAGAIFMGKNTCE HHHHHCCCCCEEEECCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCEEEECCCHHH ALGDYCAGPNHVLPTSRTARFSSPLGVYDFQKRTSLIHVSEAGAQTLGRIAATLAYGEGL HHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEHHHHHHHHHHHHHHHHHCCCH QAHARSAEYRLTHK HHHHCCCCEEECCC >Mature Secondary Structure MLTLTRLDSAQPDFQARLARLLQFDDATDASIEEAVATILHAVKTRGDAAVLEYTERFDR CEEEECCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC LPAPSAASLELGAAELAAALAGLPEDTRAALEAAADRVRRYHEKQLQGSWTYTEDDGTVL CCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEE GQKVTPLDRVGLYVPGGKAAYPSSVLMNAIPAKVAGVAELVMVVPTPGGERNALVLAAAA CCCCCCHHHCCEECCCCCCCCCHHHHHHHHHHHHHHHEEEEEEEECCCCCCCEEEEHHHH IAGVDRVFTIGGAQAVAALAYGTETVPQVDKIVGPGNAYVAAAKRRVFGTVGIDMIAGPS HHCCHHEEEECCHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHEECCHHEECCCC EILVIADGSTPAEWVAMDLFSQAEHDELAQSILLSPDPDYLDAVAAAIDQLIVEMPRAEV EEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHH IRTSLTNRGALIRTHDLHDAAAIANAIAPEHLELAVSDPEALLPKLRHAGAIFMGKNTCE HHHHHCCCCCEEEECCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCEEEECCCHHH ALGDYCAGPNHVLPTSRTARFSSPLGVYDFQKRTSLIHVSEAGAQTLGRIAATLAYGEGL HHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEHHHHHHHHHHHHHHHHHCCCH QAHARSAEYRLTHK HHHHCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA