| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is flgK [H]
Identifier: 74317646
GI number: 74317646
Start: 1713825
End: 1715714
Strand: Reverse
Name: flgK [H]
Synonym: Tbd_1628
Alternate gene names: 74317646
Gene position: 1715714-1713825 (Counterclockwise)
Preceding gene: 74317647
Following gene: 74317645
Centisome position: 58.96
GC content: 65.93
Gene sequence:
>1890_bases ATGGCTACCAGCATTCTCGGCATTGGACAGAGCGCGCTCGCCGCCGCACAGGCGGGCCTGAGTACGACCGGCCATAACAT CGCCAACGCGTCGACGCCAGGTTACAGCCGCCAGGTCGTCGTGCAGGGCGCTGCGCTGCCGCAGAATTTCGGTTTCGGCT TCATGGGGCAGGGCACGCAGATCGAGACGGTCAAGCGCGTCTACAACGAATACCTCGGCGTGCAGGTCCAGACCGCGCAG GCGTCGAAAAGCGGGCTCGACAGCTATTACGCGCAGATCAAGCAGATCGACAACCTGCTGGCCGATCCCGCGTCGGGCTT GTCGCCGTCGTTGCAGGATTTCTTCAGCGGCATCCAGGAGCTGGCCGCCAACCCTGGGGCGATGCCTTCGCGCCAGGCCG CGCTGTCCTCGGCCGAGGCGCTGGCGTCGCGCTTCAACAGTCTGGCGGGCCGGCTCGACGAGATCGAGCAGGGCGTCAAC AGCCAGATCGTGTCGAGCGTCGACGTCATCAACACCTACGCCGAGCAGATCGCACGGCTCAACGACGCAATCGGAAAGGC CCAGCGTGCGAGCGGCCAGCCCGCCAACGACCTGCTCGACCAGCGCGACCAGCTGATCCTCGACCTCAACAAGGAAATCA AGGCGACCGTCGTCAAGCAGGGCGACGGTGCCTACAACGTGTTCATCGGCAACGGCCAGCCGCTCGTCGTGGGCGGCACG ACGTCGCGCCTGAGCACGATGGCGTCGCCGACCAATCCCGAGCGCATCGAGGTCGCCTATCAGGCCAGCGACGGCAGCGT CTCGATCGTCGGCGAGTCGGGTCTGGTTGGTGGCAAGCTCGGCGGGTTGGTGGAATTTCGTACCCGGACGCTCGAGCCCG CACAAAACGCGCTCGGGCGGGTCGCGATCGGGCTCGCGAGCAGCTTCAACGCGCAACATCGGTTGGGCATCGACCTCAAC GGCGCGGCAGGCGGCGAATTCTTCACAACGGCCGGTCCCGTCGTCACCGCGAACACAAACAACGCCAGCACGAGCACCGC CGCGGTCGCGGCAAGCATCAGCGACGTCGGCGCGCTGACGACGAGCGACTACCGCCTGCAATACGACGGCAGCAGTTACA CGCTGACGCGCGTGTCCGACCGGGCGAGCTGGACCGTCGTCGACGGACAGACCGTCGACGGCGTCACCTTGAGCTTGAGC GGTACGGCGGCGGCGGGAGACAGTTTCCTGATCCGGCCGACTGTCGCCGGGGCGAGCCAGTTCGCCGTCGCCATCACCGA CCCCGCCAAGATCGCCGCCGCGGCGCCGATTCGTACTGCGGCTGCAAACACCAATACCGGATCGGGGGCAATCAGCGCAG GTACGGTCGATTCGACCTATCCGGCCATGCCGCTCGGTGCGCCGGTGACGCTGACCTACGACGCTCTCACCAACACCCTC AGCGATGGTGCAGGTTTTTCTACCACCTATGCGCCGGGCGCGACAATCAGCTTCGGCGGCATCAGTTTCACGCTCAGCGG CACGCCCGCCGACAACGACAGCTTCACCGTGGAGCCGAACACCAACGGCGTCGGGGACAACCGCAACGCGCTGCTGCTCG GTGGCCTGCAGAGCGCGAACACGCTCGGCAACGGCACGATCAGCTACCAGGGCGCGTATTCGCAATTCGTTAGCCAGATC GGCAACAAGACCCGCGAGCTCGAAGTGACGAGCAGCGCCGCGGGCAAGCTGCTGTCGGAATCGACGACCGCGCTGCAGAA CGAGTCCGGCGTCAACCTCGACGAAGAGGCGACGAACCTGCTGCGCTACCAGCAGGCCTATCAGGCCGCGGCCAAGGTCA TGCAGGTCGCGAGCGAAATGTTCGACGCGCTGCTCACGATCGGCAGGTAA
Upstream 100 bases:
>100_bases GGATGCTCGACACCGCGTGACTCAAGAAACAGCCCCGGCAACCGATTCAGCTATCGAGTGGATTCGTATCGTTTTCCCCA ACCCTTTCGCAACCCTATAG
Downstream 100 bases:
>100_bases GAGGACTTCACCATGCGCATCAGCACCCAAACCCTGTTCGAAGCCGGCGCCGCCCGTCTGAGCGAACTGCAGTCGGACAT GGTCAAGACCCAGCAGCAGA
Product: flagellar hook-associated protein FlgK
Products: NA
Alternate protein names: HAP1 [H]
Number of amino acids: Translated: 629; Mature: 628
Protein sequence:
>629_residues MATSILGIGQSALAAAQAGLSTTGHNIANASTPGYSRQVVVQGAALPQNFGFGFMGQGTQIETVKRVYNEYLGVQVQTAQ ASKSGLDSYYAQIKQIDNLLADPASGLSPSLQDFFSGIQELAANPGAMPSRQAALSSAEALASRFNSLAGRLDEIEQGVN SQIVSSVDVINTYAEQIARLNDAIGKAQRASGQPANDLLDQRDQLILDLNKEIKATVVKQGDGAYNVFIGNGQPLVVGGT TSRLSTMASPTNPERIEVAYQASDGSVSIVGESGLVGGKLGGLVEFRTRTLEPAQNALGRVAIGLASSFNAQHRLGIDLN GAAGGEFFTTAGPVVTANTNNASTSTAAVAASISDVGALTTSDYRLQYDGSSYTLTRVSDRASWTVVDGQTVDGVTLSLS GTAAAGDSFLIRPTVAGASQFAVAITDPAKIAAAAPIRTAAANTNTGSGAISAGTVDSTYPAMPLGAPVTLTYDALTNTL SDGAGFSTTYAPGATISFGGISFTLSGTPADNDSFTVEPNTNGVGDNRNALLLGGLQSANTLGNGTISYQGAYSQFVSQI GNKTRELEVTSSAAGKLLSESTTALQNESGVNLDEEATNLLRYQQAYQAAAKVMQVASEMFDALLTIGR
Sequences:
>Translated_629_residues MATSILGIGQSALAAAQAGLSTTGHNIANASTPGYSRQVVVQGAALPQNFGFGFMGQGTQIETVKRVYNEYLGVQVQTAQ ASKSGLDSYYAQIKQIDNLLADPASGLSPSLQDFFSGIQELAANPGAMPSRQAALSSAEALASRFNSLAGRLDEIEQGVN SQIVSSVDVINTYAEQIARLNDAIGKAQRASGQPANDLLDQRDQLILDLNKEIKATVVKQGDGAYNVFIGNGQPLVVGGT TSRLSTMASPTNPERIEVAYQASDGSVSIVGESGLVGGKLGGLVEFRTRTLEPAQNALGRVAIGLASSFNAQHRLGIDLN GAAGGEFFTTAGPVVTANTNNASTSTAAVAASISDVGALTTSDYRLQYDGSSYTLTRVSDRASWTVVDGQTVDGVTLSLS GTAAAGDSFLIRPTVAGASQFAVAITDPAKIAAAAPIRTAAANTNTGSGAISAGTVDSTYPAMPLGAPVTLTYDALTNTL SDGAGFSTTYAPGATISFGGISFTLSGTPADNDSFTVEPNTNGVGDNRNALLLGGLQSANTLGNGTISYQGAYSQFVSQI GNKTRELEVTSSAAGKLLSESTTALQNESGVNLDEEATNLLRYQQAYQAAAKVMQVASEMFDALLTIGR >Mature_628_residues ATSILGIGQSALAAAQAGLSTTGHNIANASTPGYSRQVVVQGAALPQNFGFGFMGQGTQIETVKRVYNEYLGVQVQTAQA SKSGLDSYYAQIKQIDNLLADPASGLSPSLQDFFSGIQELAANPGAMPSRQAALSSAEALASRFNSLAGRLDEIEQGVNS QIVSSVDVINTYAEQIARLNDAIGKAQRASGQPANDLLDQRDQLILDLNKEIKATVVKQGDGAYNVFIGNGQPLVVGGTT SRLSTMASPTNPERIEVAYQASDGSVSIVGESGLVGGKLGGLVEFRTRTLEPAQNALGRVAIGLASSFNAQHRLGIDLNG AAGGEFFTTAGPVVTANTNNASTSTAAVAASISDVGALTTSDYRLQYDGSSYTLTRVSDRASWTVVDGQTVDGVTLSLSG TAAAGDSFLIRPTVAGASQFAVAITDPAKIAAAAPIRTAAANTNTGSGAISAGTVDSTYPAMPLGAPVTLTYDALTNTLS DGAGFSTTYAPGATISFGGISFTLSGTPADNDSFTVEPNTNGVGDNRNALLLGGLQSANTLGNGTISYQGAYSQFVSQIG NKTRELEVTSSAAGKLLSESTTALQNESGVNLDEEATNLLRYQQAYQAAAKVMQVASEMFDALLTIGR
Specific function: Unknown
COG id: COG1256
COG function: function code N; Flagellar hook-associated protein
Gene ontology:
Cell location: Secreted. Bacterial flagellum (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the flagella basal body rod proteins family [H]
Homologues:
Organism=Escherichia coli, GI1787323, Length=439, Percent_Identity=36.6742596810934, Blast_Score=273, Evalue=2e-74,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010930 - InterPro: IPR001444 - InterPro: IPR002371 [H]
Pfam domain/function: PF06429 DUF1078; PF00460 Flg_bb_rod [H]
EC number: NA
Molecular weight: Translated: 64517; Mature: 64386
Theoretical pI: Translated: 4.39; Mature: 4.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATSILGIGQSALAAAQAGLSTTGHNIANASTPGYSRQVVVQGAALPQNFGFGFMGQGTQ CCCCEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCH IETVKRVYNEYLGVQVQTAQASKSGLDSYYAQIKQIDNLLADPASGLSPSLQDFFSGIQE HHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH LAANPGAMPSRQAALSSAEALASRFNSLAGRLDEIEQGVNSQIVSSVDVINTYAEQIARL HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH NDAIGKAQRASGQPANDLLDQRDQLILDLNKEIKATVVKQGDGAYNVFIGNGQPLVVGGT HHHHHHHHHCCCCCHHHHHHCCCCEEEECCCCEEEEEEECCCCEEEEEECCCCEEEEECC TSRLSTMASPTNPERIEVAYQASDGSVSIVGESGLVGGKLGGLVEFRTRTLEPAQNALGR HHHHHHHCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCCEEEHHHHCCCHHHHHHHH VAIGLASSFNAQHRLGIDLNGAAGGEFFTTAGPVVTANTNNASTSTAAVAASISDVGALT EEEHHHHCCCCCEEECEEECCCCCCCEEECCCCEEEECCCCCCCCHHHHHHHHHHHCCEE TSDYRLQYDGSSYTLTRVSDRASWTVVDGQTVDGVTLSLSGTAAAGDSFLIRPTVAGASQ CCCEEEEECCCEEEEEEECCCCEEEEECCCEECCEEEEECCCCCCCCCEEEEEECCCCCE FAVAITDPAKIAAAAPIRTAAANTNTGSGAISAGTVDSTYPAMPLGAPVTLTYDALTNTL EEEEEECCHHHHHCCCCHHHCCCCCCCCCCEECCCCCCCCCCCCCCCCEEEEHHHHHHHH SDGAGFSTTYAPGATISFGGISFTLSGTPADNDSFTVEPNTNGVGDNRNALLLGGLQSAN CCCCCCCCCCCCCCEEEECCEEEEEECCCCCCCCEEECCCCCCCCCCCCEEEEECCCCCC TLGNGTISYQGAYSQFVSQIGNKTRELEVTSSAAGKLLSESTTALQNESGVNLDEEATNL CCCCCEEEECCHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCHHHHHH LRYQQAYQAAAKVMQVASEMFDALLTIGR HHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure ATSILGIGQSALAAAQAGLSTTGHNIANASTPGYSRQVVVQGAALPQNFGFGFMGQGTQ CCCEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCH IETVKRVYNEYLGVQVQTAQASKSGLDSYYAQIKQIDNLLADPASGLSPSLQDFFSGIQE HHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH LAANPGAMPSRQAALSSAEALASRFNSLAGRLDEIEQGVNSQIVSSVDVINTYAEQIARL HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH NDAIGKAQRASGQPANDLLDQRDQLILDLNKEIKATVVKQGDGAYNVFIGNGQPLVVGGT HHHHHHHHHCCCCCHHHHHHCCCCEEEECCCCEEEEEEECCCCEEEEEECCCCEEEEECC TSRLSTMASPTNPERIEVAYQASDGSVSIVGESGLVGGKLGGLVEFRTRTLEPAQNALGR HHHHHHHCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCCEEEHHHHCCCHHHHHHHH VAIGLASSFNAQHRLGIDLNGAAGGEFFTTAGPVVTANTNNASTSTAAVAASISDVGALT EEEHHHHCCCCCEEECEEECCCCCCCEEECCCCEEEECCCCCCCCHHHHHHHHHHHCCEE TSDYRLQYDGSSYTLTRVSDRASWTVVDGQTVDGVTLSLSGTAAAGDSFLIRPTVAGASQ CCCEEEEECCCEEEEEEECCCCEEEEECCCEECCEEEEECCCCCCCCCEEEEEECCCCCE FAVAITDPAKIAAAAPIRTAAANTNTGSGAISAGTVDSTYPAMPLGAPVTLTYDALTNTL EEEEEECCHHHHHCCCCHHHCCCCCCCCCCEECCCCCCCCCCCCCCCCEEEEHHHHHHHH SDGAGFSTTYAPGATISFGGISFTLSGTPADNDSFTVEPNTNGVGDNRNALLLGGLQSAN CCCCCCCCCCCCCCEEEECCEEEEEECCCCCCCCEEECCCCCCCCCCCCEEEEECCCCCC TLGNGTISYQGAYSQFVSQIGNKTRELEVTSSAAGKLLSESTTALQNESGVNLDEEATNL CCCCCEEEECCHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCHHHHHH LRYQQAYQAAAKVMQVASEMFDALLTIGR HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503; 8158647 [H]