Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

Click here to switch to the map view.

The map label for this gene is 74317285

Identifier: 74317285

GI number: 74317285

Start: 1331079

End: 1331612

Strand: Direct

Name: 74317285

Synonym: Tbd_1267

Alternate gene names: NA

Gene position: 1331079-1331612 (Clockwise)

Preceding gene: 74317284

Following gene: 74317286

Centisome position: 45.74

GC content: 67.04

Gene sequence:

>534_bases
ATGGCGACGATTCGATTCCTTCGCCAGGCCGGGATGCTTGCGCTGGCATTCAGCCTGTTTGCAGGCAGTCCCGCAGCCGC
CCAGAACAACGCCGAATACCGCGTCAAGGCCGGGTTTCTGTACAACTTCATCGCGTTCACCGAGTGGCCGGCAGGCGTCG
GGAGCCGGCTCACGCTCTGCGTCCACGGTGGCCACCCCTTTAACGGCGAACTGCACGCGCTAGAGGGCAAGACGGTCAAC
GGCCGCACGCTTTCGCTCCGCCACACCGAAGGACTTCATCAGCTGAAAGGTTGCCAGGTCGTGTTCGTTGCACGCGCGGC
GATCGACAGCTTGCCGCGCGTTGTCGACGCGCTGCGCGGCGAGCCCGTGCTGATCGTGGCCGATAGTCCCGGCGCGCTCG
ACGCCGGCGCCGGCATCAATCTGCTGCTGCGGCAGGACCGCGTCGCGTTCGAGGTGAATCTGGGCGCGACGCGCGCTGCG
CGGCTCGGCCTGAGTTCGAAGCTGCTGCGGCTCGCGAGCGAGGTGCGGCGATGA

Upstream 100 bases:

>100_bases
GACTACGCCCAGCCCGGCTCGGCGTTCAACTGGCAGAACGTTTTCGAGCAGGACGGGCGGAGTGCACGGCTGAAGGCCGT
GTACCGATTCTGAGCGGACG

Downstream 100 bases:

>100_bases
GCCCCGAGGGAACGTCGACGACGCTGCGGGCGCGGCTGCGGCGCACGAGCCTGATCACGCTCGCGGTCGCCCTCGGCATC
GTCGCCGTGATCATCATGGC

Product: putative transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 176

Protein sequence:

>177_residues
MATIRFLRQAGMLALAFSLFAGSPAAAQNNAEYRVKAGFLYNFIAFTEWPAGVGSRLTLCVHGGHPFNGELHALEGKTVN
GRTLSLRHTEGLHQLKGCQVVFVARAAIDSLPRVVDALRGEPVLIVADSPGALDAGAGINLLLRQDRVAFEVNLGATRAA
RLGLSSKLLRLASEVRR

Sequences:

>Translated_177_residues
MATIRFLRQAGMLALAFSLFAGSPAAAQNNAEYRVKAGFLYNFIAFTEWPAGVGSRLTLCVHGGHPFNGELHALEGKTVN
GRTLSLRHTEGLHQLKGCQVVFVARAAIDSLPRVVDALRGEPVLIVADSPGALDAGAGINLLLRQDRVAFEVNLGATRAA
RLGLSSKLLRLASEVRR
>Mature_176_residues
ATIRFLRQAGMLALAFSLFAGSPAAAQNNAEYRVKAGFLYNFIAFTEWPAGVGSRLTLCVHGGHPFNGELHALEGKTVNG
RTLSLRHTEGLHQLKGCQVVFVARAAIDSLPRVVDALRGEPVLIVADSPGALDAGAGINLLLRQDRVAFEVNLGATRAAR
LGLSSKLLRLASEVRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18914; Mature: 18783

Theoretical pI: Translated: 10.81; Mature: 10.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATIRFLRQAGMLALAFSLFAGSPAAAQNNAEYRVKAGFLYNFIAFTEWPAGVGSRLTLC
CHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCEEEEECCEEEHHHHCCCCCCCCCEEEEE
VHGGHPFNGELHALEGKTVNGRTLSLRHTEGLHQLKGCQVVFVARAAIDSLPRVVDALRG
EECCCCCCCCEEEECCCEECCEEEEEECCCCHHHHCCCEEEEEEHHHHHHHHHHHHHHCC
EPVLIVADSPGALDAGAGINLLLRQDRVAFEVNLGATRAARLGLSSKLLRLASEVRR
CCEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCHHHHCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
ATIRFLRQAGMLALAFSLFAGSPAAAQNNAEYRVKAGFLYNFIAFTEWPAGVGSRLTLC
HHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCEEEEECCEEEHHHHCCCCCCCCCEEEEE
VHGGHPFNGELHALEGKTVNGRTLSLRHTEGLHQLKGCQVVFVARAAIDSLPRVVDALRG
EECCCCCCCCEEEECCCEECCEEEEEECCCCHHHHCCCEEEEEEHHHHHHHHHHHHHHCC
EPVLIVADSPGALDAGAGINLLLRQDRVAFEVNLGATRAARLGLSSKLLRLASEVRR
CCEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCHHHHCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA