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The map label for this gene is yhfW [H]

Identifier: 74317253

GI number: 74317253

Start: 1295641

End: 1297155

Strand: Reverse

Name: yhfW [H]

Synonym: Tbd_1235

Alternate gene names: 74317253

Gene position: 1297155-1295641 (Counterclockwise)

Preceding gene: 74317271

Following gene: 74317249

Centisome position: 44.58

GC content: 67.85

Gene sequence:

>1515_bases
ATGACCCATTCCGTATGGCGCGGCACGGCCGCAAACGATCGCGCGAGTCGTCACCCGCAACTTTCCGGCCGGGTGGAGGC
CGACGTCGCGATCATCGGCGGCGGCATCACCGGGGTCACCTGTGCCGCCCTGCTCGCGCTGGCCGGCCGCCGGGTCGTTG
TGCTCGAGGCACGCACGCTCGGCTTCGGCACGACCGGCCATTCGACCGGGAATCTCTACGAGGCCCTCGATGCGGGGCTC
GCCGGCGTCGAGAAAAAATGGGGCAAGGACGTGGTCCGCCAGGTCATTGCCTCGCGGCGCGAAGCGGTCGATCTGGTCGA
GCGCTTCGCCGCCGGCATCGGCGAGGCGGTCGCATTTCGTCGCTGCCCGCTGGTCCAGTACAGCGAAGACGACTGGTCGC
AAATCGAAGAAGAGTACGAGACCCTGCAAGCAGCGGGGGTGGCGGTCCGGTTCGGTGACGCCGAGGAACTGCCCGGCGCG
ACCGGACGCGCCATGGTCCTCGACGGCCAGGCGCAGTTCCATCCCTTCAACTATGTACAGGGCGTGGCGGAGCGCGCGGT
CGGGCACGGCGCACAGATTTATGAGGACTCGGCGGTCGTGGAGATCTCGGCCGGGGACGGCCTGGTGCGCACCGCGTCCG
GCGCAGTCAAGGCCAAGGCCATCGTCGTCGCCACCCACACGCCCAAGGGCGTTTACGGCCTGCATGGGCAGATGCTGACC
TGCAGGGAATACGCCGCGGCCTACGAATTTCCGTCGCTTTCGCTGCCCCAGGGCATCTTCTGGCAGCGCGGGGCGGTCAC
GCGCTCGTTCCGCAAGCTCGAAGTGGGGGGAAGGCGCTATCTGATCACGGTCGGCTCGCCCGACAAGACCGGGCTGCACG
ATCCGCAGAAATCGCTCGCGGCCGTCGAATCGCTGTTCGACCGGAAAGTCCGCGCCGGTGACGAACGCTGGGCCTGGTCG
GCGCAGGCCTACCATTCGCCCGATCTCTTGCCCTACATCGGTCACAGCGCCCTGCACGACGTCTATATTGCGACCGGCTT
CGGGGCCGACGGCCTGACCTACGGCACGCTCGCCGCCCAGATCCTCTGCGACGCGATAGTCGGCAAGGACAACCGTTGGG
CCGAGCTATACCGCCCCGGACGCTTTGCGCCGCTCAAATCTGCGAAGCAGACGCTCGAGGAGCAGACGGTCGCGTTGAAA
GGCCTGATCGGCGACCGGCTCGCCATACCCGACTACGCGGAGGCGTCCTCGATACCGCCGGGTAGCGGTGCTGTCGTCAA
GGCGCAGGGACGCAATATCGCGCTGTACCGCGACCCGGCCGGTGCGCTGCACGGGGTGTCCGCAGCGTGCACCCACCTTG
GCTGTATCGTTCACTGGAACGCATTGGAGAAAAGCTGGGACTGCCCCTGTCACGGCAGCCGCTTCGGCACCGACGGCAGC
GTGATCGAGGGGCCGGCACTCGCCGCCCTGGAACCGGTCGACCTCGGGCAGGCCGGGGACGCCGAGATCGGGTAA

Upstream 100 bases:

>100_bases
CGCGGGATCGCAGCCGCTTTTCAGCGCCGTTGCGTCCTATAACAGAACCTGGCGCCAGAGCGCCGATTCGAACCTGCTCG
GCTTCCCTCAAGGAGTTCGC

Downstream 100 bases:

>100_bases
CGCCCCGCCTCAGGCCTCGCTCACGCCGACGAGGCGGACGATGCCGTCCTGGTCGACGTTTTCCATCCTCACCTTGTAGC
CCCAGAGCCGCGCGACATGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 504; Mature: 503

Protein sequence:

>504_residues
MTHSVWRGTAANDRASRHPQLSGRVEADVAIIGGGITGVTCAALLALAGRRVVVLEARTLGFGTTGHSTGNLYEALDAGL
AGVEKKWGKDVVRQVIASRREAVDLVERFAAGIGEAVAFRRCPLVQYSEDDWSQIEEEYETLQAAGVAVRFGDAEELPGA
TGRAMVLDGQAQFHPFNYVQGVAERAVGHGAQIYEDSAVVEISAGDGLVRTASGAVKAKAIVVATHTPKGVYGLHGQMLT
CREYAAAYEFPSLSLPQGIFWQRGAVTRSFRKLEVGGRRYLITVGSPDKTGLHDPQKSLAAVESLFDRKVRAGDERWAWS
AQAYHSPDLLPYIGHSALHDVYIATGFGADGLTYGTLAAQILCDAIVGKDNRWAELYRPGRFAPLKSAKQTLEEQTVALK
GLIGDRLAIPDYAEASSIPPGSGAVVKAQGRNIALYRDPAGALHGVSAACTHLGCIVHWNALEKSWDCPCHGSRFGTDGS
VIEGPALAALEPVDLGQAGDAEIG

Sequences:

>Translated_504_residues
MTHSVWRGTAANDRASRHPQLSGRVEADVAIIGGGITGVTCAALLALAGRRVVVLEARTLGFGTTGHSTGNLYEALDAGL
AGVEKKWGKDVVRQVIASRREAVDLVERFAAGIGEAVAFRRCPLVQYSEDDWSQIEEEYETLQAAGVAVRFGDAEELPGA
TGRAMVLDGQAQFHPFNYVQGVAERAVGHGAQIYEDSAVVEISAGDGLVRTASGAVKAKAIVVATHTPKGVYGLHGQMLT
CREYAAAYEFPSLSLPQGIFWQRGAVTRSFRKLEVGGRRYLITVGSPDKTGLHDPQKSLAAVESLFDRKVRAGDERWAWS
AQAYHSPDLLPYIGHSALHDVYIATGFGADGLTYGTLAAQILCDAIVGKDNRWAELYRPGRFAPLKSAKQTLEEQTVALK
GLIGDRLAIPDYAEASSIPPGSGAVVKAQGRNIALYRDPAGALHGVSAACTHLGCIVHWNALEKSWDCPCHGSRFGTDGS
VIEGPALAALEPVDLGQAGDAEIG
>Mature_503_residues
THSVWRGTAANDRASRHPQLSGRVEADVAIIGGGITGVTCAALLALAGRRVVVLEARTLGFGTTGHSTGNLYEALDAGLA
GVEKKWGKDVVRQVIASRREAVDLVERFAAGIGEAVAFRRCPLVQYSEDDWSQIEEEYETLQAAGVAVRFGDAEELPGAT
GRAMVLDGQAQFHPFNYVQGVAERAVGHGAQIYEDSAVVEISAGDGLVRTASGAVKAKAIVVATHTPKGVYGLHGQMLTC
REYAAAYEFPSLSLPQGIFWQRGAVTRSFRKLEVGGRRYLITVGSPDKTGLHDPQKSLAAVESLFDRKVRAGDERWAWSA
QAYHSPDLLPYIGHSALHDVYIATGFGADGLTYGTLAAQILCDAIVGKDNRWAELYRPGRFAPLKSAKQTLEEQTVALKG
LIGDRLAIPDYAEASSIPPGSGAVVKAQGRNIALYRDPAGALHGVSAACTHLGCIVHWNALEKSWDCPCHGSRFGTDGSV
IEGPALAALEPVDLGQAGDAEIG

Specific function: Unknown

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

Organism=Escherichia coli, GI1787559, Length=236, Percent_Identity=29.2372881355932, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR017941
- InterPro:   IPR005805 [H]

Pfam domain/function: PF01266 DAO; PF00355 Rieske [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 53522; Mature: 53391

Theoretical pI: Translated: 6.46; Mature: 6.46

Prosite motif: PS00199 RIESKE_1 ; PS00200 RIESKE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHSVWRGTAANDRASRHPQLSGRVEADVAIIGGGITGVTCAALLALAGRRVVVLEARTL
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHCCCEEEEEEEEEC
GFGTTGHSTGNLYEALDAGLAGVEKKWGKDVVRQVIASRREAVDLVERFAAGIGEAVAFR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RCPLVQYSEDDWSQIEEEYETLQAAGVAVRFGDAEELPGATGRAMVLDGQAQFHPFNYVQ
CCCCCEECCCHHHHHHHHHHHHHHCCEEEEECCHHHCCCCCCCEEEECCCCCCCCHHHHH
GVAERAVGHGAQIYEDSAVVEISAGDGLVRTASGAVKAKAIVVATHTPKGVYGLHGQMLT
HHHHHHHCCCCEEECCCEEEEEECCCCEEEECCCCEEEEEEEEEECCCCCEEECCCCEEH
CREYAAAYEFPSLSLPQGIFWQRGAVTRSFRKLEVGGRRYLITVGSPDKTGLHDPQKSLA
HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHEECCCEEEEEEECCCCCCCCCCHHHHHH
AVESLFDRKVRAGDERWAWSAQAYHSPDLLPYIGHSALHDVYIATGFGADGLTYGTLAAQ
HHHHHHHHHHHCCCCCCEECCCCCCCCCCCHHHCHHHHHHEEEEECCCCCCCHHHHHHHH
ILCDAIVGKDNRWAELYRPGRFAPLKSAKQTLEEQTVALKGLIGDRLAIPDYAEASSIPP
HHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC
GSGAVVKAQGRNIALYRDPAGALHGVSAACTHLGCIVHWNALEKSWDCPCHGSRFGTDGS
CCCCEEEECCCEEEEEECCCCHHHHHHHHHHHHHHEEEECHHCCCCCCCCCCCCCCCCCC
VIEGPALAALEPVDLGQAGDAEIG
EECCCCCEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
THSVWRGTAANDRASRHPQLSGRVEADVAIIGGGITGVTCAALLALAGRRVVVLEARTL
CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHCCCEEEEEEEEEC
GFGTTGHSTGNLYEALDAGLAGVEKKWGKDVVRQVIASRREAVDLVERFAAGIGEAVAFR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RCPLVQYSEDDWSQIEEEYETLQAAGVAVRFGDAEELPGATGRAMVLDGQAQFHPFNYVQ
CCCCCEECCCHHHHHHHHHHHHHHCCEEEEECCHHHCCCCCCCEEEECCCCCCCCHHHHH
GVAERAVGHGAQIYEDSAVVEISAGDGLVRTASGAVKAKAIVVATHTPKGVYGLHGQMLT
HHHHHHHCCCCEEECCCEEEEEECCCCEEEECCCCEEEEEEEEEECCCCCEEECCCCEEH
CREYAAAYEFPSLSLPQGIFWQRGAVTRSFRKLEVGGRRYLITVGSPDKTGLHDPQKSLA
HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHEECCCEEEEEEECCCCCCCCCCHHHHHH
AVESLFDRKVRAGDERWAWSAQAYHSPDLLPYIGHSALHDVYIATGFGADGLTYGTLAAQ
HHHHHHHHHHHCCCCCCEECCCCCCCCCCCHHHCHHHHHHEEEEECCCCCCCHHHHHHHH
ILCDAIVGKDNRWAELYRPGRFAPLKSAKQTLEEQTVALKGLIGDRLAIPDYAEASSIPP
HHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC
GSGAVVKAQGRNIALYRDPAGALHGVSAACTHLGCIVHWNALEKSWDCPCHGSRFGTDGS
CCCCEEEECCCEEEEEECCCCHHHHHHHHHHHHHHEEEECHHCCCCCCCCCCCCCCCCCC
VIEGPALAALEPVDLGQAGDAEIG
EECCCCCEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]