| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is maeB [H]
Identifier: 74317199
GI number: 74317199
Start: 1241111
End: 1242334
Strand: Direct
Name: maeB [H]
Synonym: Tbd_1181
Alternate gene names: 74317199
Gene position: 1241111-1242334 (Clockwise)
Preceding gene: 74317198
Following gene: 74317200
Centisome position: 42.65
GC content: 64.95
Gene sequence:
>1224_bases ATGAGCCAAGCCTCCCTCAAGAAAAAAGCCCTCGACTACCACCGCCTGCCCAGACCTGGCAAGCTCGAAGTCGTTTCGTC GAAACCCTGCGCGACCCAGGCCGACCTCTCGCTCGCCTATACCCCGGGCGTCGCCCAGCCGGTGCTGGAGATCGCGAAGA ATCCCGCCAAGGCCTACGACTACACCAACAAGGGCAATCTCGTCGCCGTGATCACCGACGGTACCGCGATTCTCGGACTC GGTGACCGCGGCGCGCTCGCCGCGAAGCCGGTCATGGAAGGCAAGGCCGTCCTCTTCAAGCAATTCGCCGACATCGACGT CTACGACATCGAGGTCAATGCCAGAACGCCGCAGGACTTCATCAAGGTCGTCGAGGCGATCGCGCCGACCTTCGGCGGCA TCAATCTCGAGGACATCGCCGCACCGCACTGCTTCGAGATCGAAGCCGCGCTGAAGAAGAAGCTCGACATCCCGGTGTTC CACGACGACCAGCATGGCACCGCCGTTATCATCTGCGCGGGGCTCATCAACGCGCTGCACGTCCAGGGCAAGACGCTCGA CAGTGCGAAGATCGTCTGCCTCGGCGCGGGCGCCGCGGGGATCGCGTCGATGAAGCTCCTGCTCGCGATGGGCGCGAGGA AGTCCAACATCCTGCTCGTCGATTCCAAGGGCGTCGTGCACAAGGGGCGCACCGACCTGAACGCCTTCAAGAAGGGTTTC GCCCGCGCGACCAAACTGCGTACGCTCGAGGACGCGATGAACGGCGCCGACGTGTTCGTCGGCGTCTCGGGCGCCGACCT CGTGAGCCCGGCCATGGTCAAGAGCATGGCCGACAACCCGGTGGTTTTCGCGCTCGCCAACCCGAATCCCGAGATCTCGC CGGCGAAGGCGATGGCCGCGCGCAGCGACCTCGTGATGGCGACCGGACGCTCCGACTATCCGAACCAGGTCAACAACGTA CTTGGCTTTCCCTTCATCTTCCGCGGCGCGCTCGATGCGCGCGCACGCGAGATCACGCAGGACATGCTGATCGCCGCCGT CAACGCGCTCGCCGAACTCGCGCGCGAGCCGGTTCCGGCTGCGGTGCTCAAGGCCTATCAGCTGAAGAAACTCAAGTTCG GACCGGACTACATCCTGCCCAAGCCTTTCGACCCGCGGCTGGCCGAGCGTGTGCCGCAGGCCGTCGCCAAGGCGGCCCGG AAGGCCGTCAGAAAACGGCGCTGA
Upstream 100 bases:
>100_bases GCGCAACTCAAGATCTGGAAAGACTGACCGCGGCCCGCGCCGACATGCGCGGTCAAATCCGCGATAATGGCGGCTTCGTC AATCCGCTCGCCGTCTTTCC
Downstream 100 bases:
>100_bases GCGAACAAAACACGGCCGTGAAGCCCGTCCCGCGCCCCGTTTATCTCGATCTGTTCCGCATCCATCTGCCCCTGCCGGGC TGGGTGTCGATCCTGCACCG
Product: malate dehydrogenase
Products: NA
Alternate protein names: NADP-ME [H]
Number of amino acids: Translated: 407; Mature: 406
Protein sequence:
>407_residues MSQASLKKKALDYHRLPRPGKLEVVSSKPCATQADLSLAYTPGVAQPVLEIAKNPAKAYDYTNKGNLVAVITDGTAILGL GDRGALAAKPVMEGKAVLFKQFADIDVYDIEVNARTPQDFIKVVEAIAPTFGGINLEDIAAPHCFEIEAALKKKLDIPVF HDDQHGTAVIICAGLINALHVQGKTLDSAKIVCLGAGAAGIASMKLLLAMGARKSNILLVDSKGVVHKGRTDLNAFKKGF ARATKLRTLEDAMNGADVFVGVSGADLVSPAMVKSMADNPVVFALANPNPEISPAKAMAARSDLVMATGRSDYPNQVNNV LGFPFIFRGALDARAREITQDMLIAAVNALAELAREPVPAAVLKAYQLKKLKFGPDYILPKPFDPRLAERVPQAVAKAAR KAVRKRR
Sequences:
>Translated_407_residues MSQASLKKKALDYHRLPRPGKLEVVSSKPCATQADLSLAYTPGVAQPVLEIAKNPAKAYDYTNKGNLVAVITDGTAILGL GDRGALAAKPVMEGKAVLFKQFADIDVYDIEVNARTPQDFIKVVEAIAPTFGGINLEDIAAPHCFEIEAALKKKLDIPVF HDDQHGTAVIICAGLINALHVQGKTLDSAKIVCLGAGAAGIASMKLLLAMGARKSNILLVDSKGVVHKGRTDLNAFKKGF ARATKLRTLEDAMNGADVFVGVSGADLVSPAMVKSMADNPVVFALANPNPEISPAKAMAARSDLVMATGRSDYPNQVNNV LGFPFIFRGALDARAREITQDMLIAAVNALAELAREPVPAAVLKAYQLKKLKFGPDYILPKPFDPRLAERVPQAVAKAAR KAVRKRR >Mature_406_residues SQASLKKKALDYHRLPRPGKLEVVSSKPCATQADLSLAYTPGVAQPVLEIAKNPAKAYDYTNKGNLVAVITDGTAILGLG DRGALAAKPVMEGKAVLFKQFADIDVYDIEVNARTPQDFIKVVEAIAPTFGGINLEDIAAPHCFEIEAALKKKLDIPVFH DDQHGTAVIICAGLINALHVQGKTLDSAKIVCLGAGAAGIASMKLLLAMGARKSNILLVDSKGVVHKGRTDLNAFKKGFA RATKLRTLEDAMNGADVFVGVSGADLVSPAMVKSMADNPVVFALANPNPEISPAKAMAARSDLVMATGRSDYPNQVNNVL GFPFIFRGALDARAREITQDMLIAAVNALAELAREPVPAAVLKAYQLKKLKFGPDYILPKPFDPRLAERVPQAVAKAARK AVRKRR
Specific function: Unknown
COG id: COG0281
COG function: function code C; Malic enzyme
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the phosphate acetyltransferase and butyryltransferase family [H]
Homologues:
Organism=Homo sapiens, GI4505143, Length=346, Percent_Identity=27.4566473988439, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI62420882, Length=349, Percent_Identity=25.5014326647564, Blast_Score=82, Evalue=1e-15, Organism=Homo sapiens, GI62420880, Length=349, Percent_Identity=25.5014326647564, Blast_Score=82, Evalue=1e-15, Organism=Homo sapiens, GI239049447, Length=349, Percent_Identity=25.5014326647564, Blast_Score=82, Evalue=1e-15, Organism=Homo sapiens, GI4505145, Length=345, Percent_Identity=27.2463768115942, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI270265879, Length=318, Percent_Identity=27.9874213836478, Blast_Score=69, Evalue=9e-12, Organism=Escherichia coli, GI1788806, Length=400, Percent_Identity=57, Blast_Score=454, Evalue=1e-129, Organism=Escherichia coli, GI87081919, Length=402, Percent_Identity=24.6268656716418, Blast_Score=74, Evalue=1e-14, Organism=Drosophila melanogaster, GI24646388, Length=345, Percent_Identity=28.695652173913, Blast_Score=83, Evalue=3e-16, Organism=Drosophila melanogaster, GI24646386, Length=345, Percent_Identity=28.695652173913, Blast_Score=83, Evalue=4e-16, Organism=Drosophila melanogaster, GI281363505, Length=397, Percent_Identity=25.6926952141058, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI78707236, Length=397, Percent_Identity=25.6926952141058, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI78707232, Length=397, Percent_Identity=25.6926952141058, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI281363503, Length=397, Percent_Identity=25.6926952141058, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI281362672, Length=400, Percent_Identity=26, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI21356279, Length=400, Percent_Identity=26, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI281362674, Length=400, Percent_Identity=26, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI78707242, Length=342, Percent_Identity=26.6081871345029, Blast_Score=78, Evalue=1e-14, Organism=Drosophila melanogaster, GI78707238, Length=342, Percent_Identity=26.6081871345029, Blast_Score=78, Evalue=1e-14, Organism=Drosophila melanogaster, GI78707240, Length=342, Percent_Identity=26.6081871345029, Blast_Score=77, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015884 - InterPro: IPR012301 - InterPro: IPR012302 - InterPro: IPR012188 - InterPro: IPR016040 - InterPro: IPR002505 [H]
Pfam domain/function: PF00390 malic; PF03949 Malic_M; PF01515 PTA_PTB [H]
EC number: =1.1.1.40 [H]
Molecular weight: Translated: 43391; Mature: 43260
Theoretical pI: Translated: 10.06; Mature: 10.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQASLKKKALDYHRLPRPGKLEVVSSKPCATQADLSLAYTPGVAQPVLEIAKNPAKAYD CCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCEEEECCCHHHHHHHHHCCCHHHCC YTNKGNLVAVITDGTAILGLGDRGALAAKPVMEGKAVLFKQFADIDVYDIEVNARTPQDF CCCCCCEEEEEECCEEEEEECCCCCCCCCCHHCCHHHHHHHHCCCEEEEEEECCCCHHHH IKVVEAIAPTFGGINLEDIAAPHCFEIEAALKKKLDIPVFHDDQHGTAVIICAGLINALH HHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHCCCCCEEECCCCCCEEEEHHHHHHHHH VQGKTLDSAKIVCLGAGAAGIASMKLLLAMGARKSNILLVDSKGVVHKGRTDLNAFKKGF CCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCEECCCCHHHHHHHHH ARATKLRTLEDAMNGADVFVGVSGADLVSPAMVKSMADNPVVFALANPNPEISPAKAMAA HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHH RSDLVMATGRSDYPNQVNNVLGFPFIFRGALDARAREITQDMLIAAVNALAELAREPVPA HCCEEEECCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH AVLKAYQLKKLKFGPDYILPKPFDPRLAERVPQAVAKAARKAVRKRR HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SQASLKKKALDYHRLPRPGKLEVVSSKPCATQADLSLAYTPGVAQPVLEIAKNPAKAYD CCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCEEEECCCHHHHHHHHHCCCHHHCC YTNKGNLVAVITDGTAILGLGDRGALAAKPVMEGKAVLFKQFADIDVYDIEVNARTPQDF CCCCCCEEEEEECCEEEEEECCCCCCCCCCHHCCHHHHHHHHCCCEEEEEEECCCCHHHH IKVVEAIAPTFGGINLEDIAAPHCFEIEAALKKKLDIPVFHDDQHGTAVIICAGLINALH HHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHCCCCCEEECCCCCCEEEEHHHHHHHHH VQGKTLDSAKIVCLGAGAAGIASMKLLLAMGARKSNILLVDSKGVVHKGRTDLNAFKKGF CCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCEECCCCHHHHHHHHH ARATKLRTLEDAMNGADVFVGVSGADLVSPAMVKSMADNPVVFALANPNPEISPAKAMAA HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHH RSDLVMATGRSDYPNQVNNVLGFPFIFRGALDARAREITQDMLIAAVNALAELAREPVPA HCCEEEECCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH AVLKAYQLKKLKFGPDYILPKPFDPRLAERVPQAVAKAARKAVRKRR HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503; 36376 [H]