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The map label for this gene is sdhC [H]

Identifier: 74317200

GI number: 74317200

Start: 1242352

End: 1242732

Strand: Direct

Name: sdhC [H]

Synonym: Tbd_1182

Alternate gene names: 74317200

Gene position: 1242352-1242732 (Clockwise)

Preceding gene: 74317199

Following gene: 74317201

Centisome position: 42.7

GC content: 70.87

Gene sequence:

>381_bases
GTGAAGCCCGTCCCGCGCCCCGTTTATCTCGATCTGTTCCGCATCCATCTGCCCCTGCCGGGCTGGGTGTCGATCCTGCA
CCGGGTGTCGGGCGCGCTGCTGTTTCTCGCGTTGCCGACGGGCGTATGGCTGCTCTCGGTCTCGCTGTCGGACGAGGCGG
GCTACCGGTACGTCAGCGAGGTCTTCGCGCATCCGCTCGCGCGCACCGCCACGCTGGTGCTGGTCTGGGCCGCGAGCCAT
CACTTCTTCGCCGGGCTGCGCCACCTGGCGCTCGACGTGCACTGGGGCGAAGACCTCGCGTCGGCGCGCCGGAGCAGCCT
CGCCGTGATGGTCGCGGCGGGGCTCGCGACGGGCCTCGCCGCGTGGAGACTGTTCGGATGA

Upstream 100 bases:

>100_bases
AGCCTTTCGACCCGCGGCTGGCCGAGCGTGTGCCGCAGGCCGTCGCCAAGGCGGCCCGGAAGGCCGTCAGAAAACGGCGC
TGAGCGAACAAAACACGGCC

Downstream 100 bases:

>100_bases
AAGCCGCGACCGGCTCGCACACGGGGACCGGAACCTGGCTCGTGCAGCGCGCGACGGCGGTCGTGCTCGCGCTGGCCCTG
CCGCTCCTGCTGCTGCGCTT

Product: succinate dehydrogenase subunit C

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MKPVPRPVYLDLFRIHLPLPGWVSILHRVSGALLFLALPTGVWLLSVSLSDEAGYRYVSEVFAHPLARTATLVLVWAASH
HFFAGLRHLALDVHWGEDLASARRSSLAVMVAAGLATGLAAWRLFG

Sequences:

>Translated_126_residues
MKPVPRPVYLDLFRIHLPLPGWVSILHRVSGALLFLALPTGVWLLSVSLSDEAGYRYVSEVFAHPLARTATLVLVWAASH
HFFAGLRHLALDVHWGEDLASARRSSLAVMVAAGLATGLAAWRLFG
>Mature_126_residues
MKPVPRPVYLDLFRIHLPLPGWVSILHRVSGALLFLALPTGVWLLSVSLSDEAGYRYVSEVFAHPLARTATLVLVWAASH
HFFAGLRHLALDVHWGEDLASARRSSLAVMVAAGLATGLAAWRLFG

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

Organism=Escherichia coli, GI1786940, Length=122, Percent_Identity=32.7868852459016, Blast_Score=67, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 13791; Mature: 13791

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS01000 SDH_CYT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPVPRPVYLDLFRIHLPLPGWVSILHRVSGALLFLALPTGVWLLSVSLSDEAGYRYVSE
CCCCCCCHHEEHEEEECCCCHHHHHHHHHHHHHEEEECCCCEEEEEEECCCCCCHHHHHH
VFAHPLARTATLVLVWAASHHFFAGLRHLALDVHWGEDLASARRSSLAVMVAAGLATGLA
HHHHHHHHHHHHEEEECCCHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
AWRLFG
HHHCCC
>Mature Secondary Structure
MKPVPRPVYLDLFRIHLPLPGWVSILHRVSGALLFLALPTGVWLLSVSLSDEAGYRYVSE
CCCCCCCHHEEHEEEECCCCHHHHHHHHHHHHHEEEECCCCEEEEEEECCCCCCHHHHHH
VFAHPLARTATLVLVWAASHHFFAGLRHLALDVHWGEDLASARRSSLAVMVAAGLATGLA
HHHHHHHHHHHHEEEECCCHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
AWRLFG
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]