| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74317095
Identifier: 74317095
GI number: 74317095
Start: 1136104
End: 1137450
Strand: Reverse
Name: 74317095
Synonym: Tbd_1077
Alternate gene names: NA
Gene position: 1137450-1136104 (Counterclockwise)
Preceding gene: 74317096
Following gene: 74317094
Centisome position: 39.09
GC content: 45.73
Gene sequence:
>1347_bases TTGCTTTTGAATGAGGATCACTTTAACGATGTAAAAAGCAAACGGATTCTTCCCGCAAAACTCCAGGAAACGTTCGTCGC TTTCGCGAACTCGGATGGCGGAGACTTGTATGTTGGAATCGAGGATAAAGCGCACACCGGTGAGCGTGTCGTAGGATTTG GCGAACAGGAAGAAGCAAACGCTATCGTCTCGACTTTGCTGGAAGAGACTCAGCCCGCAGTTGAAAATGTCTCCATTGAG TTCCTCGATACCGATGGTAAAGGCTTGGTGTTACATATTGGAATTCCCAAAAGTCCAAAAGTCCACTACACAGCTTCGGG CGATTGCTTTATCCGAATTAATGCTCAAAAAAGGAAAATCAAAGGAGAAAGGATTACTCAGCTTGGGTACTCCAAAGGGG CAGAGCCATACGAACGGAAACCTGTTGCCGATGTTGAACTTCAGGAGATCGCGCAAAGCGAAGAGCTCGCTGACTATATG CGACGCGTTTCCACTCATCTCGAGCCAACAATTTTTTTAAGGAAGCAAAGACTCTTAACGTCACATGACGGCACACGCAT TCCGAACGTTGGTTGTGTGCTCCTATTTGATGAAGAACCCCAGGCGACCCTGGAAACACGTTGTGCAGTTAAAGTCTACC GACTTCGAACAACCGAGAAGGAATATAAGAGAGAGCAGTTGGAAGAAATGCCTGTAACCATCAACGGTGGCACGGAAGAA GTAATTCGTAAAACAATTGATCAAGTCGTGAAATATATTGATGGGGCAGCGTTCCGGGATGGCGGCAAGCTTGTCAAGCT TAGGTACCCAGCAGAAGCCCTAAAAGAAATATTAGTTAACGCTGTAATTCATCGCGACTACAGCCTAAACGACGATATCC ACGTTCGAATATTTGACAACCGAATCGAGGTTCAAAGCCCCGGAAAGCTACCTGGATACATGAGCCTAGACAATCTTTAT GAAGAACGCTTTTCGAGGAATCCCAACCTCGTTAGGATGCTTCACAATCTTCCCAATCCAGTAAACCACGACATCGGTGA GGGTCTAGACACGGCCAAGAATGAATTAAAAAAAGCAGGATTAGTTGAGCCCATCTTTGAAGAAAAAGATAACGCTTTCC TTGTAACCATCAAACATCAGCGAATCGCTTCTGTTGAAGAAGTCGTACTGAGTTATCTCGAGGAAAATCCAGGTACTGAA ATCACTAATAAACTTGTTCGTCAGTTGAGTGGTGAAGACGACATGCAGAAGGTGAAATTGGCACTTCAAAAGCTCAGGGC AGCCGGCCATATCGTGCCACTTGACGAGAATGCCAGCGCATTTAACTTTCGCTATGTGAAGGCATGA
Upstream 100 bases:
>100_bases CTGCAATCCTTGATGCCTGGCCATTCGCACCCAATTTTTATAATTCAAAGGAGATCTTGTGGAAGTCACGAGAATTCAGG AAGACGAACTTAATTCCCTT
Downstream 100 bases:
>100_bases GTCTTGAGCGCGGGAATTTAAGCAAGCTAAAGAGGGCGAATACCGTTGATGCACTACTGCCCCCTTTCTCCACCTAAGAA TGGAGGACTCATAGGGCACA
Product: transcriptional regulator
Products: NA
Alternate protein names: ATP-Dependent DNA Helicase; ATP-Dependent DNA Helicase RecG; Truncated ATP-Dependent DNA Helicase; Xin-Antitoxin System Toxin Component Fic Family; Transcription Regulator; ATP-Dependent DNA Helicase Protein; AAA-4 Family Protein; Divergent AAA Domain Family; ATPase AAA Family; Transcriptional Regulator With HTH Domain
Number of amino acids: Translated: 448; Mature: 448
Protein sequence:
>448_residues MLLNEDHFNDVKSKRILPAKLQETFVAFANSDGGDLYVGIEDKAHTGERVVGFGEQEEANAIVSTLLEETQPAVENVSIE FLDTDGKGLVLHIGIPKSPKVHYTASGDCFIRINAQKRKIKGERITQLGYSKGAEPYERKPVADVELQEIAQSEELADYM RRVSTHLEPTIFLRKQRLLTSHDGTRIPNVGCVLLFDEEPQATLETRCAVKVYRLRTTEKEYKREQLEEMPVTINGGTEE VIRKTIDQVVKYIDGAAFRDGGKLVKLRYPAEALKEILVNAVIHRDYSLNDDIHVRIFDNRIEVQSPGKLPGYMSLDNLY EERFSRNPNLVRMLHNLPNPVNHDIGEGLDTAKNELKKAGLVEPIFEEKDNAFLVTIKHQRIASVEEVVLSYLEENPGTE ITNKLVRQLSGEDDMQKVKLALQKLRAAGHIVPLDENASAFNFRYVKA
Sequences:
>Translated_448_residues MLLNEDHFNDVKSKRILPAKLQETFVAFANSDGGDLYVGIEDKAHTGERVVGFGEQEEANAIVSTLLEETQPAVENVSIE FLDTDGKGLVLHIGIPKSPKVHYTASGDCFIRINAQKRKIKGERITQLGYSKGAEPYERKPVADVELQEIAQSEELADYM RRVSTHLEPTIFLRKQRLLTSHDGTRIPNVGCVLLFDEEPQATLETRCAVKVYRLRTTEKEYKREQLEEMPVTINGGTEE VIRKTIDQVVKYIDGAAFRDGGKLVKLRYPAEALKEILVNAVIHRDYSLNDDIHVRIFDNRIEVQSPGKLPGYMSLDNLY EERFSRNPNLVRMLHNLPNPVNHDIGEGLDTAKNELKKAGLVEPIFEEKDNAFLVTIKHQRIASVEEVVLSYLEENPGTE ITNKLVRQLSGEDDMQKVKLALQKLRAAGHIVPLDENASAFNFRYVKA >Mature_448_residues MLLNEDHFNDVKSKRILPAKLQETFVAFANSDGGDLYVGIEDKAHTGERVVGFGEQEEANAIVSTLLEETQPAVENVSIE FLDTDGKGLVLHIGIPKSPKVHYTASGDCFIRINAQKRKIKGERITQLGYSKGAEPYERKPVADVELQEIAQSEELADYM RRVSTHLEPTIFLRKQRLLTSHDGTRIPNVGCVLLFDEEPQATLETRCAVKVYRLRTTEKEYKREQLEEMPVTINGGTEE VIRKTIDQVVKYIDGAAFRDGGKLVKLRYPAEALKEILVNAVIHRDYSLNDDIHVRIFDNRIEVQSPGKLPGYMSLDNLY EERFSRNPNLVRMLHNLPNPVNHDIGEGLDTAKNELKKAGLVEPIFEEKDNAFLVTIKHQRIASVEEVVLSYLEENPGTE ITNKLVRQLSGEDDMQKVKLALQKLRAAGHIVPLDENASAFNFRYVKA
Specific function: Unknown
COG id: COG2865
COG function: function code K; Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50629; Mature: 50629
Theoretical pI: Translated: 5.68; Mature: 5.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLNEDHFNDVKSKRILPAKLQETFVAFANSDGGDLYVGIEDKAHTGERVVGFGEQEEAN CCCCCCCCCHHHHCCCCHHHHHHHHHEEECCCCCEEEEEECCCCCCCCEEECCCCCHHHH AIVSTLLEETQPAVENVSIEFLDTDGKGLVLHIGIPKSPKVHYTASGDCFIRINAQKRKI HHHHHHHHHHCCHHHCCEEEEEECCCCEEEEEEECCCCCCEEEEECCCEEEEECCHHHHC KGERITQLGYSKGAEPYERKPVADVELQEIAQSEELADYMRRVSTHLEPTIFLRKQRLLT CCHHHHHHHCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH SHDGTRIPNVGCVLLFDEEPQATLETRCAVKVYRLRTTEKEYKREQLEEMPVTINGGTEE CCCCCCCCCCCEEEEECCCCCHHHHHHHHEEEEEECCCHHHHHHHHHHHCCEEEECCHHH VIRKTIDQVVKYIDGAAFRDGGKLVKLRYPAEALKEILVNAVIHRDYSLNDDIHVRIFDN HHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEEECC RIEVQSPGKLPGYMSLDNLYEERFSRNPNLVRMLHNLPNPVNHDIGEGLDTAKNELKKAG EEEECCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHCC LVEPIFEEKDNAFLVTIKHQRIASVEEVVLSYLEENPGTEITNKLVRQLSGEDDMQKVKL CCCHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHH ALQKLRAAGHIVPLDENASAFNFRYVKA HHHHHHHCCCEEECCCCCCEEEEEEEEC >Mature Secondary Structure MLLNEDHFNDVKSKRILPAKLQETFVAFANSDGGDLYVGIEDKAHTGERVVGFGEQEEAN CCCCCCCCCHHHHCCCCHHHHHHHHHEEECCCCCEEEEEECCCCCCCCEEECCCCCHHHH AIVSTLLEETQPAVENVSIEFLDTDGKGLVLHIGIPKSPKVHYTASGDCFIRINAQKRKI HHHHHHHHHHCCHHHCCEEEEEECCCCEEEEEEECCCCCCEEEEECCCEEEEECCHHHHC KGERITQLGYSKGAEPYERKPVADVELQEIAQSEELADYMRRVSTHLEPTIFLRKQRLLT CCHHHHHHHCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH SHDGTRIPNVGCVLLFDEEPQATLETRCAVKVYRLRTTEKEYKREQLEEMPVTINGGTEE CCCCCCCCCCCEEEEECCCCCHHHHHHHHEEEEEECCCHHHHHHHHHHHCCEEEECCHHH VIRKTIDQVVKYIDGAAFRDGGKLVKLRYPAEALKEILVNAVIHRDYSLNDDIHVRIFDN HHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEEECC RIEVQSPGKLPGYMSLDNLYEERFSRNPNLVRMLHNLPNPVNHDIGEGLDTAKNELKKAG EEEECCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHCC LVEPIFEEKDNAFLVTIKHQRIASVEEVVLSYLEENPGTEITNKLVRQLSGEDDMQKVKL CCCHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHH ALQKLRAAGHIVPLDENASAFNFRYVKA HHHHHHHCCCEEECCCCCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA