| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is yfeJ [H]
Identifier: 74316894
GI number: 74316894
Start: 926193
End: 926903
Strand: Reverse
Name: yfeJ [H]
Synonym: Tbd_0876
Alternate gene names: 74316894
Gene position: 926903-926193 (Counterclockwise)
Preceding gene: 74316896
Following gene: 74316893
Centisome position: 31.85
GC content: 65.26
Gene sequence:
>711_bases ATGCATCCTGTTCTGATTTTTCAGCACTCCCCGATCGAGGGGCCCGGCTACTTCGCGAGCTTTCTCGACCGCCACGACAT TCCCTGGCACCTGGTCCGTATCGACGCCGGCGAACCCGTGCCCTCCGCACTTAACGGCGTTTCCGGCGTCTGCTTGATGG GCGGACCAATGAGCGTGAACGACGATCTGCCCTGGATATCGCCTTTGCTCGCGTTGATCCGGCAGGCAGTGGCAGCGGAC ATACCCGTGATCGGCCATTGCCTGGGCGGCCAACTGATGGCCAAGGCACTTGGCGCGGGCGTCGGCGCAAATCCGGTCAA GGAAATCGGCTGGGGCGAGGTACGGGTCACCGACCCCGCCGCGGGCCCCTGGCTCGGGGACGACGCCGAGCCGCTACAGG TCTTCCACTGGCACGGCGAAACCTTCGCGCTGCCGGCGGGTGCGACGCGCATCCTCGAAAGCGCGTGGTGCGCGAACCAG GCTTACGTGCTGAACGGCATCCACCTCGGCATGCAGTGCCACATCGAGATGACGCCTGAACTCATCGCCACCTGGTGCGA ACACGGGGCGGACGAAATCGCCGGGGCGCGCGAAAGCCCGGCCGTGCAGGCCCCCGAAACCATCGCAGCCGAGACGGTCG AACGCATCGCGCCGCTTCACAGGCTCGCCGACAAAATTTATTCCCGCTGGATTCAAGGGCTTAGCCGCTGA
Upstream 100 bases:
>100_bases GAAGAGGCCGACCACGGCCACGCTGGTCGCTGACACCGCGGTGCACGCAAACACGCCGGCGGTTAAGATGAACGCCCGGA TTCCCTGCTTGAAGACCATC
Downstream 100 bases:
>100_bases CCGTGCGGCCGGCTCGAGGAGACGCTGGACAGCGGCACGGCGCGGCGTAGGATAGGCATCGGAAGCACATCCAGTCTGAG CACCATCTGAAACGGAGGAG
Product: hypothetical protein
Products: AMP; L-Glutamate; GMP; H+; Diphosphate [C]
Alternate protein names: NA
Number of amino acids: Translated: 236; Mature: 236
Protein sequence:
>236_residues MHPVLIFQHSPIEGPGYFASFLDRHDIPWHLVRIDAGEPVPSALNGVSGVCLMGGPMSVNDDLPWISPLLALIRQAVAAD IPVIGHCLGGQLMAKALGAGVGANPVKEIGWGEVRVTDPAAGPWLGDDAEPLQVFHWHGETFALPAGATRILESAWCANQ AYVLNGIHLGMQCHIEMTPELIATWCEHGADEIAGARESPAVQAPETIAAETVERIAPLHRLADKIYSRWIQGLSR
Sequences:
>Translated_236_residues MHPVLIFQHSPIEGPGYFASFLDRHDIPWHLVRIDAGEPVPSALNGVSGVCLMGGPMSVNDDLPWISPLLALIRQAVAAD IPVIGHCLGGQLMAKALGAGVGANPVKEIGWGEVRVTDPAAGPWLGDDAEPLQVFHWHGETFALPAGATRILESAWCANQ AYVLNGIHLGMQCHIEMTPELIATWCEHGADEIAGARESPAVQAPETIAAETVERIAPLHRLADKIYSRWIQGLSR >Mature_236_residues MHPVLIFQHSPIEGPGYFASFLDRHDIPWHLVRIDAGEPVPSALNGVSGVCLMGGPMSVNDDLPWISPLLALIRQAVAAD IPVIGHCLGGQLMAKALGAGVGANPVKEIGWGEVRVTDPAAGPWLGDDAEPLQVFHWHGETFALPAGATRILESAWCANQ AYVLNGIHLGMQCHIEMTPELIATWCEHGADEIAGARESPAVQAPETIAAETVERIAPLHRLADKIYSRWIQGLSR
Specific function: Catalyzes The Synthesis Of Gmp From Xmp. [C]
COG id: COG0518
COG function: function code F; GMP synthase - Glutamine amidotransferase domain
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 glutamine amidotransferase type-1 domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017926 - InterPro: IPR000991 [H]
Pfam domain/function: PF00117 GATase [H]
EC number: 6.3.5.2 [C]
Molecular weight: Translated: 25327; Mature: 25327
Theoretical pI: Translated: 5.03; Mature: 5.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHPVLIFQHSPIEGPGYFASFLDRHDIPWHLVRIDAGEPVPSALNGVSGVCLMGGPMSVN CCCEEEEECCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCCEEEECCCCCCC DDLPWISPLLALIRQAVAADIPVIGHCLGGQLMAKALGAGVGANPVKEIGWGEVRVTDPA CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCEEEEECCC AGPWLGDDAEPLQVFHWHGETFALPAGATRILESAWCANQAYVLNGIHLGMQCHIEMTPE CCCCCCCCCCCEEEEEECCCEEECCCCHHHHHHHHHHCCCEEEEEEEEECEEEEEEECHH LIATWCEHGADEIAGARESPAVQAPETIAAETVERIAPLHRLADKIYSRWIQGLSR HHHHHHHCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MHPVLIFQHSPIEGPGYFASFLDRHDIPWHLVRIDAGEPVPSALNGVSGVCLMGGPMSVN CCCEEEEECCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCCEEEECCCCCCC DDLPWISPLLALIRQAVAADIPVIGHCLGGQLMAKALGAGVGANPVKEIGWGEVRVTDPA CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCEEEEECCC AGPWLGDDAEPLQVFHWHGETFALPAGATRILESAWCANQAYVLNGIHLGMQCHIEMTPE CCCCCCCCCCCEEEEEECCCEEECCCCHHHHHHHHHHCCCEEEEEEEEECEEEEEEECHH LIATWCEHGADEIAGARESPAVQAPETIAAETVERIAPLHRLADKIYSRWIQGLSR HHHHHHHCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): 0.35 {8-azaXMP}} 1 {NH4+}} 0.42 {6-thioXMP}} 0.53 {ATP}} 2 {1-ribosyl-4,6-dihydroxypyrazolo[3,4-d]-pyrimidine} 0.058 {XMP}} 0.029 {XMP}} [C]
Substrates: ATP; L-Glutamine; H2O; Xanthosine 5'-phosphate [C]
Specific reaction: ATP + L-Glutamine + H2O + Xanthosine 5'-phosphate --> AMP + L-Glutamate + GMP + (2) H+ + Diphosphate [C]
General reaction: Amination [C]
Inhibitor: 1, N6-Ethenoadenosine; 1-Methyl adenosine 5'-phosphate 5'-phosphate; 2', 3'-Dihydroadenosine; 2'-Deoxyadenosine; 2, 6-Diaminopurine ribonucleoside; 2-Amino-6-methyl thiopurine ribonucleoside; 2-Fluoroadenosine; 3'-Deoxyadenosine; 5'-Azido-5'-deoxyadenosin
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7612925; 11677609 [H]