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The map label for this gene is nlpD [H]

Identifier: 74316855

GI number: 74316855

Start: 887390

End: 888319

Strand: Direct

Name: nlpD [H]

Synonym: Tbd_0837

Alternate gene names: 74316855

Gene position: 887390-888319 (Clockwise)

Preceding gene: 74316854

Following gene: 74316856

Centisome position: 30.5

GC content: 70.0

Gene sequence:

>930_bases
GTGAAGGGCCTGGCCGTCGCCTTGGCGCTGCTGCTCGGGCTGGCCGGTTGTGCGGCGCCCGGCTACGCGCCGGTCAGCGA
CCGGACCTCCGGCCGCGGGGCGGCGCGGGTCGAGGCCCCGCGGCCGACGCCCCAGATCGCGCCGTCCAGGAACGGCTTGC
ACACCGTGCAAAGCGGCCACACCTTGTACGCGATCGCCTTCGCGAACGGGCTCGATTACCGCGAGATCGCGATCTGGAAC
AAGCTCGAGTCGGCCGACCGCATCCTGGTCGGGCAGGTGCTGCGGCTGACGCCGCCCCCGGGCGAGGTCGAAATCGCGCC
GCTCGACGACGAGCCCGCCCCGGCCGCGCAACCGCTCACCGAGGCGCGCGTGCTGCGCGAACCGCAGGCCGTGCTGATGC
CGTACTCCGAAGCCAACTGGGCGCAGGTATCGAAACCCGCGGTCGCGGCCGCGCCCGAACCTCCGCCGTCCGCCCCCCCG
GCGACCGCTCCCGCGGCGACCGCTCCCGCGGCGACCGCCCCCGCCGGGCCGGCGTCGCAGAACCCGGTGCCCACCGCACC
GGTCGAAGCCTGGCTCTGGCCGGTCGAGGGCAGGCTCGCCGGACGCTTCGGCGCAGCAGGAGGCAAAGGAATAGACATTG
TCGGACAACGGAATGCGCCCGTAATAGCGGTCGCGCCGGGTAAAGTGGTTTACAGTGGCAGCGGCCTCCGTGGATACGGA
CGGCTGCTGATCGTCAAACATGCGGGCGAATACCTTTCGGCGTACGCTCACAACGAGACGATCCTGGTGAAGGAAGGCGA
CGCGGTCGCGGCAGGTCAGAAGATCGCCCTCATGGGCGACAGCGACGCCGACCGCGTGAAACTGCATTTCGAGATCCGCC
GTTATGGCAAACCGCTTGACCCACTGAATTATCTGCCGGAGCGTTCATGA

Upstream 100 bases:

>100_bases
ACGCCACCCAGACGCTGTGCCTGATCGAGCGTCAAGGCGAAGCCTTCGTCGAACAGCGCCTCGAAGGGGTGAAATTCGTG
CCGCTGCTGCCGGGGGTCGC

Downstream 100 bases:

>100_bases
GCCGCGAACACAGCGATGAATCGGATGACTTGACGCCTGACGAAACCGAGGCCGACGAGGAACGTCACGCCGCCTCGGAC
AGCAACGAGGAATTGGCCTC

Product: peptidoglycan-binding protein LysM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MKGLAVALALLLGLAGCAAPGYAPVSDRTSGRGAARVEAPRPTPQIAPSRNGLHTVQSGHTLYAIAFANGLDYREIAIWN
KLESADRILVGQVLRLTPPPGEVEIAPLDDEPAPAAQPLTEARVLREPQAVLMPYSEANWAQVSKPAVAAAPEPPPSAPP
ATAPAATAPAATAPAGPASQNPVPTAPVEAWLWPVEGRLAGRFGAAGGKGIDIVGQRNAPVIAVAPGKVVYSGSGLRGYG
RLLIVKHAGEYLSAYAHNETILVKEGDAVAAGQKIALMGDSDADRVKLHFEIRRYGKPLDPLNYLPERS

Sequences:

>Translated_309_residues
MKGLAVALALLLGLAGCAAPGYAPVSDRTSGRGAARVEAPRPTPQIAPSRNGLHTVQSGHTLYAIAFANGLDYREIAIWN
KLESADRILVGQVLRLTPPPGEVEIAPLDDEPAPAAQPLTEARVLREPQAVLMPYSEANWAQVSKPAVAAAPEPPPSAPP
ATAPAATAPAATAPAGPASQNPVPTAPVEAWLWPVEGRLAGRFGAAGGKGIDIVGQRNAPVIAVAPGKVVYSGSGLRGYG
RLLIVKHAGEYLSAYAHNETILVKEGDAVAAGQKIALMGDSDADRVKLHFEIRRYGKPLDPLNYLPERS
>Mature_309_residues
MKGLAVALALLLGLAGCAAPGYAPVSDRTSGRGAARVEAPRPTPQIAPSRNGLHTVQSGHTLYAIAFANGLDYREIAIWN
KLESADRILVGQVLRLTPPPGEVEIAPLDDEPAPAAQPLTEARVLREPQAVLMPYSEANWAQVSKPAVAAAPEPPPSAPP
ATAPAATAPAATAPAGPASQNPVPTAPVEAWLWPVEGRLAGRFGAAGGKGIDIVGQRNAPVIAVAPGKVVYSGSGLRGYG
RLLIVKHAGEYLSAYAHNETILVKEGDAVAAGQKIALMGDSDADRVKLHFEIRRYGKPLDPLNYLPERS

Specific function: May be involved in stationary-phase survival [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=263, Percent_Identity=38.4030418250951, Blast_Score=166, Evalue=3e-42,
Organism=Escherichia coli, GI87082174, Length=148, Percent_Identity=45.945945945946, Blast_Score=140, Evalue=7e-35,
Organism=Escherichia coli, GI87082297, Length=116, Percent_Identity=37.9310344827586, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 32122; Mature: 32122

Theoretical pI: Translated: 8.40; Mature: 8.40

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGLAVALALLLGLAGCAAPGYAPVSDRTSGRGAARVEAPRPTPQIAPSRNGLHTVQSGH
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEECCCC
TLYAIAFANGLDYREIAIWNKLESADRILVGQVLRLTPPPGEVEIAPLDDEPAPAAQPLT
EEEEEEEECCCCCEEEEHHHHHCCCCCEEEEHHEEECCCCCCEEEEECCCCCCCCCCCHH
EARVLREPQAVLMPYSEANWAQVSKPAVAAAPEPPPSAPPATAPAATAPAATAPAGPASQ
HHHHHCCCCEEEEECCCCCHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NPVPTAPVEAWLWPVEGRLAGRFGAAGGKGIDIVGQRNAPVIAVAPGKVVYSGSGLRGYG
CCCCCCCHHEEEECCCCEEEEEECCCCCCCEEEEECCCCCEEEECCCCEEEECCCCCCCC
RLLIVKHAGEYLSAYAHNETILVKEGDAVAAGQKIALMGDSDADRVKLHFEIRRYGKPLD
EEEEEEECCHHHHHHHCCCEEEEECCCEEECCCEEEEECCCCCCEEEEEEEEECCCCCCC
PLNYLPERS
HHCCCCCCC
>Mature Secondary Structure
MKGLAVALALLLGLAGCAAPGYAPVSDRTSGRGAARVEAPRPTPQIAPSRNGLHTVQSGH
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEECCCC
TLYAIAFANGLDYREIAIWNKLESADRILVGQVLRLTPPPGEVEIAPLDDEPAPAAQPLT
EEEEEEEECCCCCEEEEHHHHHCCCCCEEEEHHEEECCCCCCEEEEECCCCCCCCCCCHH
EARVLREPQAVLMPYSEANWAQVSKPAVAAAPEPPPSAPPATAPAATAPAATAPAGPASQ
HHHHHCCCCEEEEECCCCCHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NPVPTAPVEAWLWPVEGRLAGRFGAAGGKGIDIVGQRNAPVIAVAPGKVVYSGSGLRGYG
CCCCCCCHHEEEECCCCEEEEEECCCCCCCEEEEECCCCCEEEECCCCEEEECCCCCCCC
RLLIVKHAGEYLSAYAHNETILVKEGDAVAAGQKIALMGDSDADRVKLHFEIRRYGKPLD
EEEEEEECCHHHHHHHCCCEEEEECCCEEECCCEEEEECCCCCCEEEEEEEEECCCCCCC
PLNYLPERS
HHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973354 [H]