| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
Click here to switch to the map view.
The map label for this gene is 74316747
Identifier: 74316747
GI number: 74316747
Start: 771075
End: 771956
Strand: Reverse
Name: 74316747
Synonym: Tbd_0729
Alternate gene names: NA
Gene position: 771956-771075 (Counterclockwise)
Preceding gene: 74316748
Following gene: 74316746
Centisome position: 26.53
GC content: 72.79
Gene sequence:
>882_bases ATGCCGCGCACCTCGATCCTGACCCGCACCGACCACGACCGCGACAGCGCGGGCATGACCTACGTCTACCCGGTCGTCTC GCGCCGCGCCCGCGGCGTCTCGATCGGCGTCAACCTCAACCCGAACAACGCCTGCAACTGGGCCTGCGTCTACTGCCAGG TGCCGGACCTCAAGCGCGGCACCGCGCCGCCGATCGATCTGGCGCGACTCGAAACCGAGCTGCGCGCGATGCTCGACGAC GTCGTGCATGGCGACTTCATGCAGCGCCGCGTGCCGCCCGAGGCGCGGCGGCTCAACGACGTCGCGCTGTCGGGCAACGG CGAGCCGACGAGCGCGCGGGCGTTTCCCGAGGTCGTCGAACTGATCGGCCGGGTCATGGCCGACTTCGGCCTCGTCGGCC GCGAAGGCAGTGCGCAAGGACAAGCGGCCAAACTCGTGCTGATCACCAACGGCAGCCTCGCCGACCGCCCGCGCGTGCAG CAGGGCCTCCGCCGGATCGCGGCGCTCGGCGGCGAGGCGTGGTTCAAGTTCGACAGCGCGACCGCCGAGGGCATGCGCGC AATCAACCAGACCCGCGTCTCGCCGGCGCGGCAGTTCGAACGCCTGGCGGCGACCGCGCGGCTGTGCCCGACCTGGCTGC AGACCTGCGTCTTCGCGCGCGACGGCGCGCCGCCGAGCGAGGCCGAGCAGGCTGCGTATCTCGCCGCGGTCACGCGCATT CGCGCCGAGGCGATCCCGGTGCAGGGCGTGCTGCTCTACGGCCTCGCGCGCCCGTCGATGCAGCCGCAGGCGAGCCGGCT CTCGGCGCTGCCGGCCGAATGGCTCGAGGCTTACGCCGAGCGGATTCGCGCCGCGGGCCTGCCGGTGCGCGTCTCGCCAT GA
Upstream 100 bases:
>100_bases CACCCCTCGAGTTCTCCCGCGCGCCTGCGGGCTTGCCCCGCCCGGCGCCGCGCCCAAGGCCGATGTTCGCCGCGCCGCCG GTTGATGAGAAAATCCGCCG
Downstream 100 bases:
>100_bases TCCACGGCATCGGCACCGACCTGCTCGACGCGCGCCGCATCCGCGCCGGGCTCGCGCGCTACGGCGAGCACTACGCCGAC CGCATCCTCGCGCCGGCCGA
Product: hypothetical protein
Products: NA
Alternate protein names: Radical SAM Domain-Containing Protein; Radical SAM Family Protein
Number of amino acids: Translated: 293; Mature: 292
Protein sequence:
>293_residues MPRTSILTRTDHDRDSAGMTYVYPVVSRRARGVSIGVNLNPNNACNWACVYCQVPDLKRGTAPPIDLARLETELRAMLDD VVHGDFMQRRVPPEARRLNDVALSGNGEPTSARAFPEVVELIGRVMADFGLVGREGSAQGQAAKLVLITNGSLADRPRVQ QGLRRIAALGGEAWFKFDSATAEGMRAINQTRVSPARQFERLAATARLCPTWLQTCVFARDGAPPSEAEQAAYLAAVTRI RAEAIPVQGVLLYGLARPSMQPQASRLSALPAEWLEAYAERIRAAGLPVRVSP
Sequences:
>Translated_293_residues MPRTSILTRTDHDRDSAGMTYVYPVVSRRARGVSIGVNLNPNNACNWACVYCQVPDLKRGTAPPIDLARLETELRAMLDD VVHGDFMQRRVPPEARRLNDVALSGNGEPTSARAFPEVVELIGRVMADFGLVGREGSAQGQAAKLVLITNGSLADRPRVQ QGLRRIAALGGEAWFKFDSATAEGMRAINQTRVSPARQFERLAATARLCPTWLQTCVFARDGAPPSEAEQAAYLAAVTRI RAEAIPVQGVLLYGLARPSMQPQASRLSALPAEWLEAYAERIRAAGLPVRVSP >Mature_292_residues PRTSILTRTDHDRDSAGMTYVYPVVSRRARGVSIGVNLNPNNACNWACVYCQVPDLKRGTAPPIDLARLETELRAMLDDV VHGDFMQRRVPPEARRLNDVALSGNGEPTSARAFPEVVELIGRVMADFGLVGREGSAQGQAAKLVLITNGSLADRPRVQQ GLRRIAALGGEAWFKFDSATAEGMRAINQTRVSPARQFERLAATARLCPTWLQTCVFARDGAPPSEAEQAAYLAAVTRIR AEAIPVQGVLLYGLARPSMQPQASRLSALPAEWLEAYAERIRAAGLPVRVSP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31856; Mature: 31725
Theoretical pI: Translated: 9.55; Mature: 9.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRTSILTRTDHDRDSAGMTYVYPVVSRRARGVSIGVNLNPNNACNWACVYCQVPDLKRG CCCCCCEECCCCCCCCCCCEEEEHHHHCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCC TAPPIDLARLETELRAMLDDVVHGDFMQRRVPPEARRLNDVALSGNGEPTSARAFPEVVE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCEEECCCCCCCCHHHHHHHHH LIGRVMADFGLVGREGSAQGQAAKLVLITNGSLADRPRVQQGLRRIAALGGEAWFKFDSA HHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHEEEECCH TAEGMRAINQTRVSPARQFERLAATARLCPTWLQTCVFARDGAPPSEAEQAAYLAAVTRI HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH RAEAIPVQGVLLYGLARPSMQPQASRLSALPAEWLEAYAERIRAAGLPVRVSP HHHHCCCCHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCEEECC >Mature Secondary Structure PRTSILTRTDHDRDSAGMTYVYPVVSRRARGVSIGVNLNPNNACNWACVYCQVPDLKRG CCCCCEECCCCCCCCCCCEEEEHHHHCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCC TAPPIDLARLETELRAMLDDVVHGDFMQRRVPPEARRLNDVALSGNGEPTSARAFPEVVE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCEEECCCCCCCCHHHHHHHHH LIGRVMADFGLVGREGSAQGQAAKLVLITNGSLADRPRVQQGLRRIAALGGEAWFKFDSA HHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHEEEECCH TAEGMRAINQTRVSPARQFERLAATARLCPTWLQTCVFARDGAPPSEAEQAAYLAAVTRI HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH RAEAIPVQGVLLYGLARPSMQPQASRLSALPAEWLEAYAERIRAAGLPVRVSP HHHHCCCCHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA