| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74316566
Identifier: 74316566
GI number: 74316566
Start: 573681
End: 574829
Strand: Reverse
Name: 74316566
Synonym: Tbd_0548
Alternate gene names: NA
Gene position: 574829-573681 (Counterclockwise)
Preceding gene: 74316567
Following gene: 74316565
Centisome position: 19.75
GC content: 72.5
Gene sequence:
>1149_bases GTGAGCCTGCTGCTCAAAGCGTTGAAACAGGCCGAAGCCGCGAACGCGGAATCGTCGAACGCCGCCGACGGCTACGGCCG CGTCGAAGGCGATCTGGAACTCGAGCCCGCGCTTCCGGGCGCCGCGAAGGCCCGCGAGTGGGTCGAGCCGCCCGGCCTGC TGTTCGGCAAGTCCGGCGCCGCCCCGGAGCGGGAGCGCCCACTGCTGTCGCGGCTGCCGCATCTCTCGCTGGTCCCGCTG ACCGCGCTTCTCGCCGGGCTCGTCGCCGCCGCATACGGCGTGTACCTCTACTTCGCGCTCCAACCGGCCGCGCCCGCCCC GCCTCCGCCCGCCGTCGACGAAAGCGCGTACCTCATCCCGTCGGCCGCCTCTCGCCCCGCTGTACCTGCGGTGCCCACGG CGCCGGAAACCGCTGCTCCGCCCGAGCCGCGCAAGGCCCCGCCCCCTGCGCCGCGCCTTGCCCCGCCGCCCGCTTCCGGC GGGCCGGCCTCGCCTGCCCCACCGACCCCGGCGGCACGCCCGGCGGCGCCCACCGCGCCATCGGCGCCGTCGCCAGCCCC GAGTCCCGCGGTGCGCTTCCGGCCCGATGCGCAGTCGAGCCTGCTGACCGAGGCGCATGCCGCCTACCAGCGCGGCGCCA TCGACGAGTCGCTACGGCTCTACACGCGGGCTGCGAATGCCGCGCCGAGCGTCGATGCCCTGCTCGGACTGGCCGCGATC GCGGGCGTGCAGAAACGCGAGGCGGACGCACAGCGCCTGTATCAGCGCGTGCTCGACCTCGATCCACGCAACGCGACCGC GCAGGCCGCCTTGCTCGATCTTCTCGGCAGCACCGACGACGGGGCCGCCGAAAGTCGCCTGAAGCTTCTGCTCGAACGTG AGCCGAGCCCCCATCTCTATCAGACCCTCGGCAATCTCTACGCCGGCCAGAACCGCTGGGGCGATGCGCAGGCGGCGTAT TTCGAGGCCTTCCGCGGCGCCGCGAACAACGCCGACTATGCCTACAACCTCGCCGTGAGCCTCGATCAGTTGCACCAGTA TCCCGCCGCGTTGAGCTACTACACGAAAGCCCTGGCGCTCGGCGGCGCTCACCGCTTCGATCGTGCGCAGGCCGAAGCGC GGGTGCAGCAACTGCAACGGATGCGCTGA
Upstream 100 bases:
>100_bases GCCAATCCCTCGCTCGAGGACGAGGAGTTGCGGCGTTTCCAGCACCTCCTGCCGCGCGTCGGCAGCAGGCAGTGATTCGA ATCCACCCACGGACGACACC
Downstream 100 bases:
>100_bases CCGCATGGAACGCCGCAAGAAACTGCGCATGGGCGAAACCCTGGTGTCCCAGGGGCTCATCACGCTCGACCAGCTGCGCA TCGGCCTCAAGGAGCAAAAG
Product: TPR repeat-containing protein
Products: NA
Alternate protein names: Tetratricopeptide TPR_2 Repeat Protein; Tetratricopeptide Domain Protein
Number of amino acids: Translated: 382; Mature: 381
Protein sequence:
>382_residues MSLLLKALKQAEAANAESSNAADGYGRVEGDLELEPALPGAAKAREWVEPPGLLFGKSGAAPERERPLLSRLPHLSLVPL TALLAGLVAAAYGVYLYFALQPAAPAPPPPAVDESAYLIPSAASRPAVPAVPTAPETAAPPEPRKAPPPAPRLAPPPASG GPASPAPPTPAARPAAPTAPSAPSPAPSPAVRFRPDAQSSLLTEAHAAYQRGAIDESLRLYTRAANAAPSVDALLGLAAI AGVQKREADAQRLYQRVLDLDPRNATAQAALLDLLGSTDDGAAESRLKLLLEREPSPHLYQTLGNLYAGQNRWGDAQAAY FEAFRGAANNADYAYNLAVSLDQLHQYPAALSYYTKALALGGAHRFDRAQAEARVQQLQRMR
Sequences:
>Translated_382_residues MSLLLKALKQAEAANAESSNAADGYGRVEGDLELEPALPGAAKAREWVEPPGLLFGKSGAAPERERPLLSRLPHLSLVPL TALLAGLVAAAYGVYLYFALQPAAPAPPPPAVDESAYLIPSAASRPAVPAVPTAPETAAPPEPRKAPPPAPRLAPPPASG GPASPAPPTPAARPAAPTAPSAPSPAPSPAVRFRPDAQSSLLTEAHAAYQRGAIDESLRLYTRAANAAPSVDALLGLAAI AGVQKREADAQRLYQRVLDLDPRNATAQAALLDLLGSTDDGAAESRLKLLLEREPSPHLYQTLGNLYAGQNRWGDAQAAY FEAFRGAANNADYAYNLAVSLDQLHQYPAALSYYTKALALGGAHRFDRAQAEARVQQLQRMR >Mature_381_residues SLLLKALKQAEAANAESSNAADGYGRVEGDLELEPALPGAAKAREWVEPPGLLFGKSGAAPERERPLLSRLPHLSLVPLT ALLAGLVAAAYGVYLYFALQPAAPAPPPPAVDESAYLIPSAASRPAVPAVPTAPETAAPPEPRKAPPPAPRLAPPPASGG PASPAPPTPAARPAAPTAPSAPSPAPSPAVRFRPDAQSSLLTEAHAAYQRGAIDESLRLYTRAANAAPSVDALLGLAAIA GVQKREADAQRLYQRVLDLDPRNATAQAALLDLLGSTDDGAAESRLKLLLEREPSPHLYQTLGNLYAGQNRWGDAQAAYF EAFRGAANNADYAYNLAVSLDQLHQYPAALSYYTKALALGGAHRFDRAQAEARVQQLQRMR
Specific function: Unknown
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39994; Mature: 39863
Theoretical pI: Translated: 7.09; Mature: 7.09
Prosite motif: PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 0.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLLLKALKQAEAANAESSNAADGYGRVEGDLELEPALPGAAKAREWVEPPGLLFGKSGA CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHCCCCCEEEECCCC APERERPLLSRLPHLSLVPLTALLAGLVAAAYGVYLYFALQPAAPAPPPPAVDESAYLIP CCHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCEECC SAASRPAVPAVPTAPETAAPPEPRKAPPPAPRLAPPPASGGPASPAPPTPAARPAAPTAP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SAPSPAPSPAVRFRPDAQSSLLTEAHAAYQRGAIDESLRLYTRAANAAPSVDALLGLAAI CCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHH AGVQKREADAQRLYQRVLDLDPRNATAQAALLDLLGSTDDGAAESRLKLLLEREPSPHLY HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHH QTLGNLYAGQNRWGDAQAAYFEAFRGAANNADYAYNLAVSLDQLHQYPAALSYYTKALAL HHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHH GGAHRFDRAQAEARVQQLQRMR CCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SLLLKALKQAEAANAESSNAADGYGRVEGDLELEPALPGAAKAREWVEPPGLLFGKSGA HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHCCCCCEEEECCCC APERERPLLSRLPHLSLVPLTALLAGLVAAAYGVYLYFALQPAAPAPPPPAVDESAYLIP CCHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCEECC SAASRPAVPAVPTAPETAAPPEPRKAPPPAPRLAPPPASGGPASPAPPTPAARPAAPTAP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SAPSPAPSPAVRFRPDAQSSLLTEAHAAYQRGAIDESLRLYTRAANAAPSVDALLGLAAI CCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHH AGVQKREADAQRLYQRVLDLDPRNATAQAALLDLLGSTDDGAAESRLKLLLEREPSPHLY HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHH QTLGNLYAGQNRWGDAQAAYFEAFRGAANNADYAYNLAVSLDQLHQYPAALSYYTKALAL HHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHH GGAHRFDRAQAEARVQQLQRMR CCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA