Click here to switch to the map view.

The map label for this gene is xpsD [H]

Identifier: 74316567

GI number: 74316567

Start: 574855

End: 576600

Strand: Reverse

Name: xpsD [H]

Synonym: Tbd_0549

Alternate gene names: 74316567

Gene position: 576600-574855 (Counterclockwise)

Preceding gene: 74316568

Following gene: 74316566

Centisome position: 19.82

GC content: 65.23

Gene sequence:

>1746_bases
ATGACGATGAACACTGGCTTGAAACGCTTTCGCTTGACGCTGCTCGCTGCCGTGGTGCTCACGAGCGGATGCGTGCCGCC
GCGGGCGTTCGACACCTCGCCCGGCCACATCACGCAACCGGCCCAGCCCGCGGCAGGCACGCCGCCGGCTCCGGTCCGGG
CCGCGCCCGTGCTGCCGCCACCGAAACCCAGCGCGCCCGTACCGACGTATACGGTCGTGGTCAACGACGTCCCGGTCAAG
GATCTGCTGTTCTCGATCGCGCGCGACACCCAGTACAACATCGACCTGCATCCGGGCATCTCCGGTCGCGTCTCGCTCAA
CGCCGTGCAGGAGCCCCTGCCGGCGATCCTCGAGCGCATCGCGCGCCAGGCCGATCTGCGCTACGAGATGAACGGGCGCA
CGGTGTCGATCATGCCCGACTCGCCCTACGTCAAGACCTATACCGTCAACTACGTCAACGTCGCGCGCAACACGACATCG
AGCGTCGGGGTCGCGGCGCAGATCGCTAGCACCGGCGGAAACATCAGCTCGGCGAGCGCAGGCGGTTCGGCCGTCGGCAA
CTCGTCGACGACCACGGTCGCGAGCGAATCCAACAACAACCTCTGGAACGTGCTTGCCGAGAACATCCGCACGATTCTCG
CGGGCACTCGCGCCGTCACCCAGAGCAACGAGGAGCGCGCCGCGCGTCTGGAGGCCGAGAAGGCAGCACGCGCCGAACGC
GTCTCGCAGGCCGAAGCTGCGAGCAAGGCCGGCGCCGGGGCCGCCAGCCTGTTCACCGCGGCATTCGACAGACAGTCGAG
CTTCGACGCAAGCAACGACGTCGCGGTCAACCCTGTGGCCGGAACCGTGACCGTGCTCGGCACCGCCAAACAGCAGGCGC
TGGTCCAGCAATACCTCGACCGCGTGATGCAATCGGCGCAGCGGCAGGTGCTGATCGAGGCGACGATCGTCGAAGTCACG
CTCAAGGACCAGTATCGCGCGGGTATCGACTGGTCGAAGGCCCTGGAGGGTACGACGGGGTGGACGATCAACACTTTGAG
CGGCGGCAGCAACGCGCTCGCCAACACACTCACACCGTTCATCCAGGCGACGTACACCAACGCGGGTAGTAACGGATTTA
CCGCCGCGATCGACCTGCTGGAATCGTTCGGCAAGGCCAAGGTGCTGTCGAGCCCCAAGCTCATGGCGCTGAACAACCAG
ACCGCGCTGCTCAAGGTCGTCGACAATCTCGTGTATTTCAACGTCAAAGCCGACACGACGGCGACCGCGAACGTAGGGAC
GACGACGACGTTCACGACGACGCCGCAGACCGTGCCGGTCGGCATCGTGATGACGATGACGCCGCAGATCAACGAGAACG
GGATGGTTTCGCTGACGGTCCGCCCGACGATTTCGCGAAACGTCGGTTTCGTCCGAGATCCCAATCCAAGCATTCCGGTC
GCGATCCCCAACCAGGTTCCCGTCATCCAGGTCCGCGAAATGGAGTCATTGCTGCAGGTCCGCAGCGGTCAGACCGTCAT
TCTCGGCGGGCTGATCCAGGACGACTCGAACAACGCGCGGGACGGCATCCCGGGCCTTTCGCGCCCCGAAGGCATCGGCG
CCGTGTTCGGTCAGCACGAGCAAATCAACAGCCAGACCGAACTCGTGATCTTCCTGCGCCCGATCGTCGTCGCCAATCCC
TCGCTCGAGGACGAGGAGTTGCGGCGTTTCCAGCACCTCCTGCCGCGCGTCGGCAGCAGGCAGTGA

Upstream 100 bases:

>100_bases
TGCGCCAGCTGCCGGCCACGACGCCCGGCGTCGAGGCCCTGCGGGACGCGCCGTTTCTGCGCACCGTAAGGAAAATGCGC
GCCGTGGCGCTGCCTACTGG

Downstream 100 bases:

>100_bases
TTCGAATCCACCCACGGACGACACCGTGAGCCTGCTGCTCAAAGCGTTGAAACAGGCCGAAGCCGCGAACGCGGAATCGT
CGAACGCCGCCGACGGCTAC

Product: putative Type II secretory pathway component PulD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 581; Mature: 580

Protein sequence:

>581_residues
MTMNTGLKRFRLTLLAAVVLTSGCVPPRAFDTSPGHITQPAQPAAGTPPAPVRAAPVLPPPKPSAPVPTYTVVVNDVPVK
DLLFSIARDTQYNIDLHPGISGRVSLNAVQEPLPAILERIARQADLRYEMNGRTVSIMPDSPYVKTYTVNYVNVARNTTS
SVGVAAQIASTGGNISSASAGGSAVGNSSTTTVASESNNNLWNVLAENIRTILAGTRAVTQSNEERAARLEAEKAARAER
VSQAEAASKAGAGAASLFTAAFDRQSSFDASNDVAVNPVAGTVTVLGTAKQQALVQQYLDRVMQSAQRQVLIEATIVEVT
LKDQYRAGIDWSKALEGTTGWTINTLSGGSNALANTLTPFIQATYTNAGSNGFTAAIDLLESFGKAKVLSSPKLMALNNQ
TALLKVVDNLVYFNVKADTTATANVGTTTTFTTTPQTVPVGIVMTMTPQINENGMVSLTVRPTISRNVGFVRDPNPSIPV
AIPNQVPVIQVREMESLLQVRSGQTVILGGLIQDDSNNARDGIPGLSRPEGIGAVFGQHEQINSQTELVIFLRPIVVANP
SLEDEELRRFQHLLPRVGSRQ

Sequences:

>Translated_581_residues
MTMNTGLKRFRLTLLAAVVLTSGCVPPRAFDTSPGHITQPAQPAAGTPPAPVRAAPVLPPPKPSAPVPTYTVVVNDVPVK
DLLFSIARDTQYNIDLHPGISGRVSLNAVQEPLPAILERIARQADLRYEMNGRTVSIMPDSPYVKTYTVNYVNVARNTTS
SVGVAAQIASTGGNISSASAGGSAVGNSSTTTVASESNNNLWNVLAENIRTILAGTRAVTQSNEERAARLEAEKAARAER
VSQAEAASKAGAGAASLFTAAFDRQSSFDASNDVAVNPVAGTVTVLGTAKQQALVQQYLDRVMQSAQRQVLIEATIVEVT
LKDQYRAGIDWSKALEGTTGWTINTLSGGSNALANTLTPFIQATYTNAGSNGFTAAIDLLESFGKAKVLSSPKLMALNNQ
TALLKVVDNLVYFNVKADTTATANVGTTTTFTTTPQTVPVGIVMTMTPQINENGMVSLTVRPTISRNVGFVRDPNPSIPV
AIPNQVPVIQVREMESLLQVRSGQTVILGGLIQDDSNNARDGIPGLSRPEGIGAVFGQHEQINSQTELVIFLRPIVVANP
SLEDEELRRFQHLLPRVGSRQ
>Mature_580_residues
TMNTGLKRFRLTLLAAVVLTSGCVPPRAFDTSPGHITQPAQPAAGTPPAPVRAAPVLPPPKPSAPVPTYTVVVNDVPVKD
LLFSIARDTQYNIDLHPGISGRVSLNAVQEPLPAILERIARQADLRYEMNGRTVSIMPDSPYVKTYTVNYVNVARNTTSS
VGVAAQIASTGGNISSASAGGSAVGNSSTTTVASESNNNLWNVLAENIRTILAGTRAVTQSNEERAARLEAEKAARAERV
SQAEAASKAGAGAASLFTAAFDRQSSFDASNDVAVNPVAGTVTVLGTAKQQALVQQYLDRVMQSAQRQVLIEATIVEVTL
KDQYRAGIDWSKALEGTTGWTINTLSGGSNALANTLTPFIQATYTNAGSNGFTAAIDLLESFGKAKVLSSPKLMALNNQT
ALLKVVDNLVYFNVKADTTATANVGTTTTFTTTPQTVPVGIVMTMTPQINENGMVSLTVRPTISRNVGFVRDPNPSIPVA
IPNQVPVIQVREMESLLQVRSGQTVILGGLIQDDSNNARDGIPGLSRPEGIGAVFGQHEQINSQTELVIFLRPIVVANPS
LEDEELRRFQHLLPRVGSRQ

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=333, Percent_Identity=24.9249249249249, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 61599; Mature: 61468

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMNTGLKRFRLTLLAAVVLTSGCVPPRAFDTSPGHITQPAQPAAGTPPAPVRAAPVLPP
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PKPSAPVPTYTVVVNDVPVKDLLFSIARDTQYNIDLHPGISGRVSLNAVQEPLPAILERI
CCCCCCCCEEEEEEECCCHHHHHHHHHCCCEEEEEECCCCCCEEEHHHHHHHHHHHHHHH
ARQADLRYEMNGRTVSIMPDSPYVKTYTVNYVNVARNTTSSVGVAAQIASTGGNISSASA
HHHCCCEEEECCCEEEEECCCCCEEEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCC
GGSAVGNSSTTTVASESNNNLWNVLAENIRTILAGTRAVTQSNEERAARLEAEKAARAER
CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHH
VSQAEAASKAGAGAASLFTAAFDRQSSFDASNDVAVNPVAGTVTVLGTAKQQALVQQYLD
HHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEEEECHHHHHHHHHHHH
RVMQSAQRQVLIEATIVEVTLKDQYRAGIDWSKALEGTTGWTINTLSGGSNALANTLTPF
HHHHHHHHEEEEEEEEEEEEECCHHCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHH
IQATYTNAGSNGFTAAIDLLESFGKAKVLSSPKLMALNNQTALLKVVDNLVYFNVKADTT
HEEEECCCCCCCHHHHHHHHHHCCCEEECCCCCEEEECCCHHHHHHHHCEEEEEEECCCC
ATANVGTTTTFTTTPQTVPVGIVMTMTPQINENGMVSLTVRPTISRNVGFVRDPNPSIPV
EECCCCCCEEEECCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCEEECCCCCCCE
AIPNQVPVIQVREMESLLQVRSGQTVILGGLIQDDSNNARDGIPGLSRPEGIGAVFGQHE
ECCCCCCEEEHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCH
QINSQTELVIFLRPIVVANPSLEDEELRRFQHLLPRVGSRQ
HCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TMNTGLKRFRLTLLAAVVLTSGCVPPRAFDTSPGHITQPAQPAAGTPPAPVRAAPVLPP
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PKPSAPVPTYTVVVNDVPVKDLLFSIARDTQYNIDLHPGISGRVSLNAVQEPLPAILERI
CCCCCCCCEEEEEEECCCHHHHHHHHHCCCEEEEEECCCCCCEEEHHHHHHHHHHHHHHH
ARQADLRYEMNGRTVSIMPDSPYVKTYTVNYVNVARNTTSSVGVAAQIASTGGNISSASA
HHHCCCEEEECCCEEEEECCCCCEEEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCC
GGSAVGNSSTTTVASESNNNLWNVLAENIRTILAGTRAVTQSNEERAARLEAEKAARAER
CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHH
VSQAEAASKAGAGAASLFTAAFDRQSSFDASNDVAVNPVAGTVTVLGTAKQQALVQQYLD
HHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEEEECHHHHHHHHHHHH
RVMQSAQRQVLIEATIVEVTLKDQYRAGIDWSKALEGTTGWTINTLSGGSNALANTLTPF
HHHHHHHHEEEEEEEEEEEEECCHHCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHH
IQATYTNAGSNGFTAAIDLLESFGKAKVLSSPKLMALNNQTALLKVVDNLVYFNVKADTT
HEEEECCCCCCCHHHHHHHHHHCCCEEECCCCCEEEECCCHHHHHHHHCEEEEEEECCCC
ATANVGTTTTFTTTPQTVPVGIVMTMTPQINENGMVSLTVRPTISRNVGFVRDPNPSIPV
EECCCCCCEEEECCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCEEECCCCCCCE
AIPNQVPVIQVREMESLLQVRSGQTVILGGLIQDDSNNARDGIPGLSRPEGIGAVFGQHE
ECCCCCCEEEHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCH
QINSQTELVIFLRPIVVANPSLEDEELRRFQHLLPRVGSRQ
HCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1313415; 12024217; 10692359 [H]