| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is nosR [H]
Identifier: 74316096
GI number: 74316096
Start: 80265
End: 82142
Strand: Reverse
Name: nosR [H]
Synonym: Tbd_0078
Alternate gene names: 74316096
Gene position: 82142-80265 (Counterclockwise)
Preceding gene: 74316098
Following gene: 74316095
Centisome position: 2.82
GC content: 68.0
Gene sequence:
>1878_bases ATGTCGTATCCGCATTTGGCAAGCGCAGCTTCGCGCCCGGCGAGTCGGGTCGCGCGGCTTCGCCCTGGCGCCGTCTGGTC GCTGCTGATCGCGTTCATGCTGCTGTTCGGCACGATCCCGAATGCGGCGGCCGACCTCAGCGCACGCTACCCGCAGGTGC GGGCATTGTTTCCGGACGCCGACCGCTTCGGCGAATCCGAGGGCGATCCGCCGGCAAGCGCGGTCTACGCCGACAACGTG CTGGTCGGCTACGCCTTGCTCACCGCCGACATCGCGCCCATCCCCGCATATTCCGGCAGCCCGATCAACGTCCTGGTCGG CATCGATACCGGCGGACGCATCGTCGGCGCGCGCATCGTCCACCACGAGGAGCCGATCCTCGCCGCGGGCATCAGCGAGG CGCGCCTCGCCAGATTCGTCGACCAGTACCGCGGCAAGCCGACGAACGGCCGGATCAGCGTCGGCGCCGCGCGGGAAGGC TACGCGGCGGTCGACACGATCTCGGGCGCGACGATTTCGGTCATGGTCATCAATGCGTCGATCACGCGCGCGGTGCGCAG GGTCGCAGAATCGCGCGGCATCGCCGTGCAGGCGGCGCCGACCATTCCACCCGCTACCGCTCCCCTCGCTGCGGCTTTAC CCGCTGCCGTGCCGGCCGAAGCGCAGCGCTCCCGCGAGCCGCCCGCCAGTCGGTCGACACCCGGCCCGAGTGTGCCGGCC GCCGTAGACAAGGCGCCGGCGGCGAACCCGTCCGTCGCCCCCGCGGCGGCACCACCGCCGGCGACCCGCGAGGCCGCACC GGCCGCGACGCCGCGTCTCGCCGCACCCTCACCGCCCGAAGCCAGCTTCGCCGAGGAGCCGATGTGGCAGACGGTGTGGC GGCAGCGCAAGCTCGACATCGCCTTGCTCGGACTCGGCCTCGTCGTCCTGACGTGCATCCTGCTGTTCCAGGACTACCTC GCGCGCCGCCCCGCGCTATTGCGCTGGGTGCGGCTGGGATTTCTCGTCTACACGCTGGGTTTCATCGGCTGGTATGCGCT CGGCCAGCTCTCGATCATCAACGTCCTGACCTTCGTTCAGGCGATCACCCACCAGTTCAGCTGGGATACCTTCCTGATCG ACCCGATGCTGTTCATCCTCTGGTCGTTCGTCGCGGTCACGCTGCTGCTCTGGGGACGCGGCGTCTACTGCGGCTGGCTG TGTCCGTTCGGCGCCCTGCAGGAACTGAGCTTCCGCCTCGCGCGGCGGCTCAGACTGCCGTCTTTCGAAATCCCCCACGT CGTCCACGAGCGCATGCTCGCGCTCAAGTTCGTGATCCTGCTGGTCTTGTTCGCCCTGTCGCTGCAGTCGATGGGGCTCG CCATCCGGGTGGCCGAGGTCGAGCCCTTCAAGACGGCGATCAACTTCCGTTTCCAGCGCGAGTGGGGCTACGTCGCCTTC GCCGTGGCGGTGCTCCTACTCTCGACCTTCAACCGCAAGTTCTATTGCAAATACGTCTGCCCGCTCGGCGCGTCGCTGGT TTTTCCCGGCCGCTTCCACTCCTTCGAATGGCTGCGCCGGCGCAAGGAATGCGGCCGGCCCTGCCAGGCCTGCGCGGTCG AATGCGAGGTGCAGGCGATCCGGCCGACCGGCGAAATCGTCGTCAACGAGTGTCATCACTGTCTCGACTGCCAGGTTACC TACTATAACGATCACAAATGCCCGCCGCTGGTCGAGAAACGCAAGCGCCACGAACGCAGCAGCGCTCGCGAAGCGAGCGG CCCGGGGGCGGCCGAACTGGCACGGATCGCTGTCAGCGCCAGGCCCGCTCGCGGCGCGGCGAGTGCGAATGCAGAAAAAC CACAGGCGGTCGATGGGAATCGTGTGCCGTTGACCTAA
Upstream 100 bases:
>100_bases GCCGGTTGACTTAAATCAAGGCAGTGCGACAGGCCCGGCGGGAACATGACCGGGGTATCGGTCAGGCCCACGCCCGACCA CCGGTCAGAAGGTTCAGGCA
Downstream 100 bases:
>100_bases ATCAAGGCGGGCGGCATAGGGCGTGTTTAATCTAGCGTCGGCGTTGCAGGATTTTTCACTTTTCACAGAGGGAGGATTCA GATGGACACGAGGCTCAGTA
Product: regulator of nitric oxide reductase transcription
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 625; Mature: 624
Protein sequence:
>625_residues MSYPHLASAASRPASRVARLRPGAVWSLLIAFMLLFGTIPNAAADLSARYPQVRALFPDADRFGESEGDPPASAVYADNV LVGYALLTADIAPIPAYSGSPINVLVGIDTGGRIVGARIVHHEEPILAAGISEARLARFVDQYRGKPTNGRISVGAAREG YAAVDTISGATISVMVINASITRAVRRVAESRGIAVQAAPTIPPATAPLAAALPAAVPAEAQRSREPPASRSTPGPSVPA AVDKAPAANPSVAPAAAPPPATREAAPAATPRLAAPSPPEASFAEEPMWQTVWRQRKLDIALLGLGLVVLTCILLFQDYL ARRPALLRWVRLGFLVYTLGFIGWYALGQLSIINVLTFVQAITHQFSWDTFLIDPMLFILWSFVAVTLLLWGRGVYCGWL CPFGALQELSFRLARRLRLPSFEIPHVVHERMLALKFVILLVLFALSLQSMGLAIRVAEVEPFKTAINFRFQREWGYVAF AVAVLLLSTFNRKFYCKYVCPLGASLVFPGRFHSFEWLRRRKECGRPCQACAVECEVQAIRPTGEIVVNECHHCLDCQVT YYNDHKCPPLVEKRKRHERSSAREASGPGAAELARIAVSARPARGAASANAEKPQAVDGNRVPLT
Sequences:
>Translated_625_residues MSYPHLASAASRPASRVARLRPGAVWSLLIAFMLLFGTIPNAAADLSARYPQVRALFPDADRFGESEGDPPASAVYADNV LVGYALLTADIAPIPAYSGSPINVLVGIDTGGRIVGARIVHHEEPILAAGISEARLARFVDQYRGKPTNGRISVGAAREG YAAVDTISGATISVMVINASITRAVRRVAESRGIAVQAAPTIPPATAPLAAALPAAVPAEAQRSREPPASRSTPGPSVPA AVDKAPAANPSVAPAAAPPPATREAAPAATPRLAAPSPPEASFAEEPMWQTVWRQRKLDIALLGLGLVVLTCILLFQDYL ARRPALLRWVRLGFLVYTLGFIGWYALGQLSIINVLTFVQAITHQFSWDTFLIDPMLFILWSFVAVTLLLWGRGVYCGWL CPFGALQELSFRLARRLRLPSFEIPHVVHERMLALKFVILLVLFALSLQSMGLAIRVAEVEPFKTAINFRFQREWGYVAF AVAVLLLSTFNRKFYCKYVCPLGASLVFPGRFHSFEWLRRRKECGRPCQACAVECEVQAIRPTGEIVVNECHHCLDCQVT YYNDHKCPPLVEKRKRHERSSAREASGPGAAELARIAVSARPARGAASANAEKPQAVDGNRVPLT >Mature_624_residues SYPHLASAASRPASRVARLRPGAVWSLLIAFMLLFGTIPNAAADLSARYPQVRALFPDADRFGESEGDPPASAVYADNVL VGYALLTADIAPIPAYSGSPINVLVGIDTGGRIVGARIVHHEEPILAAGISEARLARFVDQYRGKPTNGRISVGAAREGY AAVDTISGATISVMVINASITRAVRRVAESRGIAVQAAPTIPPATAPLAAALPAAVPAEAQRSREPPASRSTPGPSVPAA VDKAPAANPSVAPAAAPPPATREAAPAATPRLAAPSPPEASFAEEPMWQTVWRQRKLDIALLGLGLVVLTCILLFQDYLA RRPALLRWVRLGFLVYTLGFIGWYALGQLSIINVLTFVQAITHQFSWDTFLIDPMLFILWSFVAVTLLLWGRGVYCGWLC PFGALQELSFRLARRLRLPSFEIPHVVHERMLALKFVILLVLFALSLQSMGLAIRVAEVEPFKTAINFRFQREWGYVAFA VAVLLLSTFNRKFYCKYVCPLGASLVFPGRFHSFEWLRRRKECGRPCQACAVECEVQAIRPTGEIVVNECHHCLDCQVTY YNDHKCPPLVEKRKRHERSSAREASGPGAAELARIAVSARPARGAASANAEKPQAVDGNRVPLT
Specific function: Transcriptional activator of the nitrous-oxide reductase gene nosZ [H]
COG id: COG0348
COG function: function code C; Polyferredoxin
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To P.denitrificans nirI [H]
Homologues:
Organism=Escherichia coli, GI1787226, Length=187, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007329 - InterPro: IPR011399 [H]
Pfam domain/function: PF04205 FMN_bind [H]
EC number: NA
Molecular weight: Translated: 67740; Mature: 67609
Theoretical pI: Translated: 9.64; Mature: 9.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYPHLASAASRPASRVARLRPGAVWSLLIAFMLLFGTIPNAAADLSARYPQVRALFPDA CCCCCHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEECCCH DRFGESEGDPPASAVYADNVLVGYALLTADIAPIPAYSGSPINVLVGIDTGGRIVGARIV HHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEE HHEEPILAAGISEARLARFVDQYRGKPTNGRISVGAAREGYAAVDTISGATISVMVINAS ECCCCHHECCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHCCCCCCEEEEEEECHH ITRAVRRVAESRGIAVQAAPTIPPATAPLAAALPAAVPAEAQRSREPPASRSTPGPSVPA HHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCC AVDKAPAANPSVAPAAAPPPATREAAPAATPRLAAPSPPEASFAEEPMWQTVWRQRKLDI HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCH ALLGLGLVVLTCILLFQDYLARRPALLRWVRLGFLVYTLGFIGWYALGQLSIINVLTFVQ HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AITHQFSWDTFLIDPMLFILWSFVAVTLLLWGRGVYCGWLCPFGALQELSFRLARRLRLP HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHCCHHHHHHHHHHHHHHHCCC SFEIPHVVHERMLALKFVILLVLFALSLQSMGLAIRVAEVEPFKTAINFRFQREWGYVAF CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHCEEEECCCCHHHH AVAVLLLSTFNRKFYCKYVCPLGASLVFPGRFHSFEWLRRRKECGRPCQACAVECEVQAI HHHHHHHHHCCCCEEEEEECCCCCCEECCCCCHHHHHHHHHHHHCCCHHHHHHHHEEEEE RPTGEIVVNECHHCLDCQVTYYNDHKCPPLVEKRKRHERSSAREASGPGAAELARIAVSA CCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC RPARGAASANAEKPQAVDGNRVPLT CCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SYPHLASAASRPASRVARLRPGAVWSLLIAFMLLFGTIPNAAADLSARYPQVRALFPDA CCCCHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEECCCH DRFGESEGDPPASAVYADNVLVGYALLTADIAPIPAYSGSPINVLVGIDTGGRIVGARIV HHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEE HHEEPILAAGISEARLARFVDQYRGKPTNGRISVGAAREGYAAVDTISGATISVMVINAS ECCCCHHECCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHCCCCCCEEEEEEECHH ITRAVRRVAESRGIAVQAAPTIPPATAPLAAALPAAVPAEAQRSREPPASRSTPGPSVPA HHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCC AVDKAPAANPSVAPAAAPPPATREAAPAATPRLAAPSPPEASFAEEPMWQTVWRQRKLDI HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCH ALLGLGLVVLTCILLFQDYLARRPALLRWVRLGFLVYTLGFIGWYALGQLSIINVLTFVQ HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AITHQFSWDTFLIDPMLFILWSFVAVTLLLWGRGVYCGWLCPFGALQELSFRLARRLRLP HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHCCHHHHHHHHHHHHHHHCCC SFEIPHVVHERMLALKFVILLVLFALSLQSMGLAIRVAEVEPFKTAINFRFQREWGYVAF CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHCEEEECCCCHHHH AVAVLLLSTFNRKFYCKYVCPLGASLVFPGRFHSFEWLRRRKECGRPCQACAVECEVQAI HHHHHHHHHCCCCEEEEEECCCCCCEECCCCCHHHHHHHHHHHHCCCHHHHHHHHEEEEE RPTGEIVVNECHHCLDCQVTYYNDHKCPPLVEKRKRHERSSAREASGPGAAELARIAVSA CCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC RPARGAASANAEKPQAVDGNRVPLT CCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Fe [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1644760; 3049543 [H]