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The map label for this gene is nirS [H]

Identifier: 74316095

GI number: 74316095

Start: 78456

End: 80183

Strand: Reverse

Name: nirS [H]

Synonym: Tbd_0077

Alternate gene names: 74316095

Gene position: 80183-78456 (Counterclockwise)

Preceding gene: 74316096

Following gene: 74316094

Centisome position: 2.76

GC content: 63.14

Gene sequence:

>1728_bases
ATGGACACGAGGCTCAGTATTCTGGCCGCAAGTATTTTTCTCATGGGTGCGACGCAGGCGATAGCCGCCGACGCACCGCC
GTCCGGGCACCCGGGCACGCCCGATCCGGAGCTGCGCTACAAGGGCGCGCCGGTGCCGATCAAGCCCGAAGAAGCCCAGG
AAACGATCACCCCGAAGGCGCCGCCCGTCACGGCCGCCGAATTCGCCCGTGCCAAGCAGATCTACTTCGAGCGCTGCGCC
GGATGCCACGGCGTCCTGCGCAAGGGCGCGACCGGCAAGCCGCTCACCCCCGACGTCACCCTGCCGCGCGGAACCGAGTA
CCTGAAAGTGTTCATCGGCTTCGGCTCGCCCGGCGGCATGCCGAACTGGGGCAGCTCCGGCATACTGAGCGACGCCGAAA
TCGACATCATGGCGCGCTTCCTGCAGCACGAACCGCCGATGCCGCCCGAATACGGCCTGGCCGAAATGAAGGCCACCTGG
AAGCTGAAGGTGCCGCCTGAAAAACGCCCCAAGAAGAAGATGAACAAGCTGGATCTGGAGAACCTCTTCTCCGTGACCCT
GCGCGACGACGGCAAGATCGCGCTGATCGACGGAGACAGCAAGAAGATCGTCTCCACCATCGAAACCGGCTATGCCGTGC
ACATCTCGCGCATGTCGGCGTCCGGACGCTATCTTTTCGTCATCGGCCGCGACGCCAAGATCGACCTCATCGACCTGTGG
ATGAAAGAGCCGGCGGTGGTGGCCGAGATCAAGGTGGGCATGGAAGCGCGCTCGGTCGAAACCTCCAAGTACAAGGGCTA
CGAGGACAAGTACGCGGTCGCCGGCACCTACTGGCCGCCGCAATTCGTGATCATGGACGGCGACACGCTGGAACCGAAAA
AGATCGTCGCCACCCGCGGCATGACCGTGGACACCCAGGAATATCACCCGGAGCCGCGCGTCGCCGCGATCATCGCCTCG
CATGAGCATCCCGAGTTCATCGTCAACGTCAAGGAGACCGGCAAGGTCCTGATGGCCAACTACGAGGACATCAACAACCT
GAAGGTGACCGAGATCGAAGCGGCGCGCTTCCTCCACGACGGCGGCTGGGATTCCACGCACCGCTACTTCATGTCGGCGG
CCAACGCCTCCAACAAGATCGCCGTGGTCGACTCGAAGAAGCAGAAACTGACAGCGCTGGTGGAAGTGGGCAAGATCCCC
CACCCCGGACGCGGCGCAAACTTTGTCGACCCGAAATTCGGGCCGGTATGGGCCACCGGCCACCTCGGCGACGACAGCAT
TGCGCTGATCGGCACCGATCCCGTCAAGCACAAGGCCAATGCCTGGAAGGTGGTGCGCACGCTGAAGGGGCTGGGCGGCG
GATCGCTGTTCCTCAAGACGCATCCGAAGTCGAAGAACCTGTGGGTCGACAGCACGCTCAACCCGGAGGCGGGCATCAGC
CAGTCGGTGGCCATCTTCGACATCGCCAATCTCGACAAGGCGCCGGAAGTGGTGAACATCGCCGAACTGGCAGGTCTGGG
CGAGGGGCCGAAGCGCGTCGTGCAGCCGGAGTACAACAAGGCCGGCGACGAAGTCTGGTTTTCGGTGTGGAACGGCCAGA
CCCAGGAATCGGCCATCGTGGTCATGAACGACAAGACGCGCAAGCTCAAGGCCGTGATCAAGGACAAGCGCCTGATCACC
CCGACCGGCAAGTTCAACGTCTACAACACGCAGCACGACATCTACTAG

Upstream 100 bases:

>100_bases
TCGTGTGCCGTTGACCTAAATCAAGGCGGGCGGCATAGGGCGTGTTTAATCTAGCGTCGGCGTTGCAGGATTTTTCACTT
TTCACAGAGGGAGGATTCAG

Downstream 100 bases:

>100_bases
GCAGGCGAGGCGGGGCAGCGATCTGCCCCGCCGCTTTCCCACGGCGGACAGCGAGAACACATGCAAACCTTGACGACAGC
GGGAACGGTGATTGCCATGG

Product: nitrite reductase

Products: NA

Alternate protein names: Cytochrome cd1; Cytochrome oxidase; Hydroxylamine reductase [H]

Number of amino acids: Translated: 575; Mature: 575

Protein sequence:

>575_residues
MDTRLSILAASIFLMGATQAIAADAPPSGHPGTPDPELRYKGAPVPIKPEEAQETITPKAPPVTAAEFARAKQIYFERCA
GCHGVLRKGATGKPLTPDVTLPRGTEYLKVFIGFGSPGGMPNWGSSGILSDAEIDIMARFLQHEPPMPPEYGLAEMKATW
KLKVPPEKRPKKKMNKLDLENLFSVTLRDDGKIALIDGDSKKIVSTIETGYAVHISRMSASGRYLFVIGRDAKIDLIDLW
MKEPAVVAEIKVGMEARSVETSKYKGYEDKYAVAGTYWPPQFVIMDGDTLEPKKIVATRGMTVDTQEYHPEPRVAAIIAS
HEHPEFIVNVKETGKVLMANYEDINNLKVTEIEAARFLHDGGWDSTHRYFMSAANASNKIAVVDSKKQKLTALVEVGKIP
HPGRGANFVDPKFGPVWATGHLGDDSIALIGTDPVKHKANAWKVVRTLKGLGGGSLFLKTHPKSKNLWVDSTLNPEAGIS
QSVAIFDIANLDKAPEVVNIAELAGLGEGPKRVVQPEYNKAGDEVWFSVWNGQTQESAIVVMNDKTRKLKAVIKDKRLIT
PTGKFNVYNTQHDIY

Sequences:

>Translated_575_residues
MDTRLSILAASIFLMGATQAIAADAPPSGHPGTPDPELRYKGAPVPIKPEEAQETITPKAPPVTAAEFARAKQIYFERCA
GCHGVLRKGATGKPLTPDVTLPRGTEYLKVFIGFGSPGGMPNWGSSGILSDAEIDIMARFLQHEPPMPPEYGLAEMKATW
KLKVPPEKRPKKKMNKLDLENLFSVTLRDDGKIALIDGDSKKIVSTIETGYAVHISRMSASGRYLFVIGRDAKIDLIDLW
MKEPAVVAEIKVGMEARSVETSKYKGYEDKYAVAGTYWPPQFVIMDGDTLEPKKIVATRGMTVDTQEYHPEPRVAAIIAS
HEHPEFIVNVKETGKVLMANYEDINNLKVTEIEAARFLHDGGWDSTHRYFMSAANASNKIAVVDSKKQKLTALVEVGKIP
HPGRGANFVDPKFGPVWATGHLGDDSIALIGTDPVKHKANAWKVVRTLKGLGGGSLFLKTHPKSKNLWVDSTLNPEAGIS
QSVAIFDIANLDKAPEVVNIAELAGLGEGPKRVVQPEYNKAGDEVWFSVWNGQTQESAIVVMNDKTRKLKAVIKDKRLIT
PTGKFNVYNTQHDIY
>Mature_575_residues
MDTRLSILAASIFLMGATQAIAADAPPSGHPGTPDPELRYKGAPVPIKPEEAQETITPKAPPVTAAEFARAKQIYFERCA
GCHGVLRKGATGKPLTPDVTLPRGTEYLKVFIGFGSPGGMPNWGSSGILSDAEIDIMARFLQHEPPMPPEYGLAEMKATW
KLKVPPEKRPKKKMNKLDLENLFSVTLRDDGKIALIDGDSKKIVSTIETGYAVHISRMSASGRYLFVIGRDAKIDLIDLW
MKEPAVVAEIKVGMEARSVETSKYKGYEDKYAVAGTYWPPQFVIMDGDTLEPKKIVATRGMTVDTQEYHPEPRVAAIIAS
HEHPEFIVNVKETGKVLMANYEDINNLKVTEIEAARFLHDGGWDSTHRYFMSAANASNKIAVVDSKKQKLTALVEVGKIP
HPGRGANFVDPKFGPVWATGHLGDDSIALIGTDPVKHKANAWKVVRTLKGLGGGSLFLKTHPKSKNLWVDSTLNPEAGIS
QSVAIFDIANLDKAPEVVNIAELAGLGEGPKRVVQPEYNKAGDEVWFSVWNGQTQESAIVVMNDKTRKLKAVIKDKRLIT
PTGKFNVYNTQHDIY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cytochrome c domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR011048
- InterPro:   IPR003143 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: =1.7.2.1; =1.7.99.1 [H]

Molecular weight: Translated: 62997; Mature: 62997

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTRLSILAASIFLMGATQAIAADAPPSGHPGTPDPELRYKGAPVPIKPEEAQETITPKA
CCCHHHHHHHHHHHHCCCHHEECCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHCCCCCC
PPVTAAEFARAKQIYFERCAGCHGVLRKGATGKPLTPDVTLPRGTEYLKVFIGFGSPGGM
CCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCC
PNWGSSGILSDAEIDIMARFLQHEPPMPPEYGLAEMKATWKLKVPPEKRPKKKMNKLDLE
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHCCEEEEEECCCCCCHHHHHHHCCCC
NLFSVTLRDDGKIALIDGDSKKIVSTIETGYAVHISRMSASGRYLFVIGRDAKIDLIDLW
CEEEEEEECCCEEEEEECCCHHHHHHHCCCEEEEEEEECCCCCEEEEEECCCCEEEEEEH
MKEPAVVAEIKVGMEARSVETSKYKGYEDKYAVAGTYWPPQFVIMDGDTLEPKKIVATRG
HCCCCEEEEEEECCCHHCCCHHHCCCCCCCEEEEECCCCCEEEEECCCCCCCCCEEEECC
MTVDTQEYHPEPRVAAIIASHEHPEFIVNVKETGKVLMANYEDINNLKVTEIEAARFLHD
CEECHHHHCCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEHHHHHHCC
GGWDSTHRYFMSAANASNKIAVVDSKKQKLTALVEVGKIPHPGRGANFVDPKFGPVWATG
CCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEC
HLGDDSIALIGTDPVKHKANAWKVVRTLKGLGGGSLFLKTHPKSKNLWVDSTLNPEAGIS
CCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEECCCCCCCCCC
QSVAIFDIANLDKAPEVVNIAELAGLGEGPKRVVQPEYNKAGDEVWFSVWNGQTQESAIV
CCEEEEEECCCCCCCCCEEHHHHHCCCCCCHHCCCCCCCCCCCEEEEEEECCCCCCCEEE
VMNDKTRKLKAVIKDKRLITPTGKFNVYNTQHDIY
EECCCCHHHHHHHHCCEEECCCCCEEEECCCCCCC
>Mature Secondary Structure
MDTRLSILAASIFLMGATQAIAADAPPSGHPGTPDPELRYKGAPVPIKPEEAQETITPKA
CCCHHHHHHHHHHHHCCCHHEECCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHCCCCCC
PPVTAAEFARAKQIYFERCAGCHGVLRKGATGKPLTPDVTLPRGTEYLKVFIGFGSPGGM
CCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCC
PNWGSSGILSDAEIDIMARFLQHEPPMPPEYGLAEMKATWKLKVPPEKRPKKKMNKLDLE
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHCCEEEEEECCCCCCHHHHHHHCCCC
NLFSVTLRDDGKIALIDGDSKKIVSTIETGYAVHISRMSASGRYLFVIGRDAKIDLIDLW
CEEEEEEECCCEEEEEECCCHHHHHHHCCCEEEEEEEECCCCCEEEEEECCCCEEEEEEH
MKEPAVVAEIKVGMEARSVETSKYKGYEDKYAVAGTYWPPQFVIMDGDTLEPKKIVATRG
HCCCCEEEEEEECCCHHCCCHHHCCCCCCCEEEEECCCCCEEEEECCCCCCCCCEEEECC
MTVDTQEYHPEPRVAAIIASHEHPEFIVNVKETGKVLMANYEDINNLKVTEIEAARFLHD
CEECHHHHCCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEHHHHHHCC
GGWDSTHRYFMSAANASNKIAVVDSKKQKLTALVEVGKIPHPGRGANFVDPKFGPVWATG
CCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEC
HLGDDSIALIGTDPVKHKANAWKVVRTLKGLGGGSLFLKTHPKSKNLWVDSTLNPEAGIS
CCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEECCCCCCCCCC
QSVAIFDIANLDKAPEVVNIAELAGLGEGPKRVVQPEYNKAGDEVWFSVWNGQTQESAIV
CCEEEEEECCCCCCCCCEEHHHHHCCCCCCHHCCCCCCCCCCCEEEEEEECCCCCCCEEE
VMNDKTRKLKAVIKDKRLITPTGKFNVYNTQHDIY
EECCCCHHHHHHHHCCEEECCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2506077; 10984043; 2155133; 2152881; 9331415; 9760233; 10329702; 11226222; 11563915 [H]