| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74316063
Identifier: 74316063
GI number: 74316063
Start: 46250
End: 46630
Strand: Reverse
Name: 74316063
Synonym: Tbd_0045
Alternate gene names: NA
Gene position: 46630-46250 (Counterclockwise)
Preceding gene: 74316064
Following gene: 74316062
Centisome position: 1.6
GC content: 64.3
Gene sequence:
>381_bases ATGGATATCGTCTCGATTGACCACGTGGTGCTGACCGTCCGCGACATCCGCGCGAGCGTGGCCTTTTACACGCGGGTGCT GGGCATGCAGGAGGTGATGTTCGGCGGCGATCGACGCGCGTTGGCATTCGGGCACAGCAAATTGAATCTCCATCAAGCCG GCCGCGAGCTCGAGCCGAAAGCGGCTCGCGCGACGCCTGGCGCCGTCGATCTCTGCCTGCTCGCGCACACGCCGATCGCA GAGATCATTCGCCATCTGGCCACGCATGGCGTTACCGTCGAGGAAGGGCCGGTCGAACGAACCGGCGCACAGGGGCCGAT CCTCTCGGTGTATGTGCGCGACCCCGACGGCAACCTGATCGAACTGTCCAATCCACGCTGA
Upstream 100 bases:
>100_bases GCCGCTCGCGCCCGCGCTCGCGACGCTGCACGCCCGCCTCAAGCAACGCTTCGACCCGCGCGGCATCCTGAACCGCGGCC GCCTGTACCCGGACTTCTGA
Downstream 100 bases:
>100_bases CATGCAGACCCATCTCGCCGCCCCCTTCCGCGAGACCTCCGAAGGCGAGGTCGCCGAGCGCATCCTGCGCAATTGCGTGC ACTGCGGCTTCTGTCTTGCG
Product: ring-cleaving dioxygenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 126; Mature: 126
Protein sequence:
>126_residues MDIVSIDHVVLTVRDIRASVAFYTRVLGMQEVMFGGDRRALAFGHSKLNLHQAGRELEPKAARATPGAVDLCLLAHTPIA EIIRHLATHGVTVEEGPVERTGAQGPILSVYVRDPDGNLIELSNPR
Sequences:
>Translated_126_residues MDIVSIDHVVLTVRDIRASVAFYTRVLGMQEVMFGGDRRALAFGHSKLNLHQAGRELEPKAARATPGAVDLCLLAHTPIA EIIRHLATHGVTVEEGPVERTGAQGPILSVYVRDPDGNLIELSNPR >Mature_126_residues MDIVSIDHVVLTVRDIRASVAFYTRVLGMQEVMFGGDRRALAFGHSKLNLHQAGRELEPKAARATPGAVDLCLLAHTPIA EIIRHLATHGVTVEEGPVERTGAQGPILSVYVRDPDGNLIELSNPR
Specific function: Is critically involved in promoting the replication of S.typhimurium cells inside host macrophages, suggesting a role in the establishment of bacterial colonization within macrophages. May be involved in the biosynthesis and modification of the peptidogly
COG id: COG0346
COG function: function code E; Lactoylglutathione lyase and related lyases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI254039722, Length=122, Percent_Identity=53.2786885245902, Blast_Score=155, Evalue=1e-38,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004360 [H]
Pfam domain/function: PF00903 Glyoxalase [H]
EC number: NA
Molecular weight: Translated: 13685; Mature: 13685
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: PS00934 GLYOXALASE_I_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDIVSIDHVVLTVRDIRASVAFYTRVLGMQEVMFGGDRRALAFGHSKLNLHQAGRELEPK CCEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHCCCCCCCC AARATPGAVDLCLLAHTPIAEIIRHLATHGVTVEEGPVERTGAQGPILSVYVRDPDGNLI CCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEE ELSNPR EECCCC >Mature Secondary Structure MDIVSIDHVVLTVRDIRASVAFYTRVLGMQEVMFGGDRRALAFGHSKLNLHQAGRELEPK CCEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHCCCCCCCC AARATPGAVDLCLLAHTPIAEIIRHLATHGVTVEEGPVERTGAQGPILSVYVRDPDGNLI CCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEE ELSNPR EECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11677609 [H]