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The map label for this gene is nirD [H]

Identifier: 73538686

GI number: 73538686

Start: 1571453

End: 1571836

Strand: Direct

Name: nirD [H]

Synonym: Reut_B4861

Alternate gene names: 73538686

Gene position: 1571453-1571836 (Clockwise)

Preceding gene: 73538685

Following gene: 73538687

Centisome position: 57.64

GC content: 63.02

Gene sequence:

>384_bases
ATGAGCCATACCCACCATCCCGAAACCTGGACTGCGATCTGCACCTTGCGCGAGATCGTGCCCAATACTGGTGTCTGCGC
GCTGGTCGACGACCAGCAGGTAGCCGTGTTCCGCATCGGCCGCGGCGAAGACGTGTACGCGATCGACAATTTCGATCCGA
ACTCGCAGGCAGCGGTGCTGTCGCGCGGCCTGGTGGGAAACATCGGCGAACGCCTGGTGGTGGCATCGCCCATCTACAAG
CAGCACTTCGACCTGAGCACCGGCGAATGCCTGGAGGCACCGGAACACTCGGTCAACGCCTACCCGGCGCGCGTCTACGA
CGGCAAGGTATGGATCGCCGCCAATGTAACGCTGCGCGAAGCCGAAGAAGAACTCGCCGCCTGA

Upstream 100 bases:

>100_bases
GAACTTGCAACGTTCCCGCCTGAGCCACATTCCCGTAGTGGCCGTGCCCGCAAAAGCAGCCTGAATTCAGGTAAACGCAA
CGAAAGCGAAGGAGAACGTG

Downstream 100 bases:

>100_bases
CACTGCAACCATGTTCCCGATGGAGACCGCGCGCATGACGCCATCCGCCCCCTCGCAGTCCCGCCCCCGGCTGATCGTCG
TCGGCAACGGCATGGCCGGC

Product: assimilatory nitrite reductase (NAD(P)H) small subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MSHTHHPETWTAICTLREIVPNTGVCALVDDQQVAVFRIGRGEDVYAIDNFDPNSQAAVLSRGLVGNIGERLVVASPIYK
QHFDLSTGECLEAPEHSVNAYPARVYDGKVWIAANVTLREAEEELAA

Sequences:

>Translated_127_residues
MSHTHHPETWTAICTLREIVPNTGVCALVDDQQVAVFRIGRGEDVYAIDNFDPNSQAAVLSRGLVGNIGERLVVASPIYK
QHFDLSTGECLEAPEHSVNAYPARVYDGKVWIAANVTLREAEEELAA
>Mature_126_residues
SHTHHPETWTAICTLREIVPNTGVCALVDDQQVAVFRIGRGEDVYAIDNFDPNSQAAVLSRGLVGNIGERLVVASPIYKQ
HFDLSTGECLEAPEHSVNAYPARVYDGKVWIAANVTLREAEEELAA

Specific function: Required for activity of the reductase [H]

COG id: COG2146

COG function: function code PR; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis nasE [H]

Homologues:

Organism=Escherichia coli, GI1789766, Length=101, Percent_Identity=50.4950495049505, Blast_Score=103, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012748
- InterPro:   IPR017881
- InterPro:   IPR017941 [H]

Pfam domain/function: NA

EC number: =1.7.1.4 [H]

Molecular weight: Translated: 13918; Mature: 13786

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHTHHPETWTAICTLREIVPNTGVCALVDDQQVAVFRIGRGEDVYAIDNFDPNSQAAVL
CCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCEEEEEEECCCCEEEEECCCCCCCCHHHH
SRGLVGNIGERLVVASPIYKQHFDLSTGECLEAPEHSVNAYPARVYDGKVWIAANVTLRE
HCCCCCCCCCEEEEECCHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCEEEEEECCEEEH
AEEELAA
HHHHHCC
>Mature Secondary Structure 
SHTHHPETWTAICTLREIVPNTGVCALVDDQQVAVFRIGRGEDVYAIDNFDPNSQAAVL
CCCCCCCHHHHHHHHHHHCCCCCEEEEECCCEEEEEEECCCCEEEEECCCCCCCCHHHH
SRGLVGNIGERLVVASPIYKQHFDLSTGECLEAPEHSVNAYPARVYDGKVWIAANVTLRE
HCCCCCCCCCEEEEECCHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCEEEEEECCEEEH
AEEELAA
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]