Click here to switch to the map view.

The map label for this gene is glxA [H]

Identifier: 73538648

GI number: 73538648

Start: 1526277

End: 1527293

Strand: Direct

Name: glxA [H]

Synonym: Reut_B4823

Alternate gene names: 73538648

Gene position: 1526277-1527293 (Clockwise)

Preceding gene: 73538637

Following gene: 73538657

Centisome position: 55.99

GC content: 63.82

Gene sequence:

>1017_bases
ATGTCGACCGATCGCACCGCGTCGTTAGCTCACTTCGCGTTCATGCCGCTCCCCAACTTCACCATGATCGCGTTCACCAA
TGCGATCGAAGTGCTGCGCATGGCGAATTACCTGAGCGGGCAGGAGCTGTACCGCTGGAGCATCATCAGCCCGGATGGCG
GGCTGGTGACGGCGAGCAACGGCCTGGCGCTCGACACTCAGCGGGCAGACAGCATCGGGCGTCCCGACATCGTGTTCGTT
TGCGGCGGCATCGACGTGCAACGTTCGACGACAGCGGAGCACCTCTCCACGCTGCGGCGTGCGGCGCGCGAGGGCACCTT
GCTGGGGAGCCTCTGCACCGGCACGTACGCCCTCGCGAAATCCGGCCTGCTGGCCGGCTATGCCTGCGCGATCCACTGGG
AAAACATGTCCGCACTCAAGGAGGAGTTTCCCGACACGCGCTTCCTGAAGGAACTGTTCGTGATCGACCGCGACCGGATC
ACGTGCACGGGCGGAGTCGCGCCGTTGGACATGATGCTGAACCTGATCACACGTCGCGTCGGTACTGCGCGAGTCACGCA
GATCGCGGAGCAGTTCATTGTCGAGCACGTGCGCGACACGAGCGCGCAGCAGAAGATCCCATTGGTCGCACGCCTGGGCT
CGGCGAAGAAGTCCCTGTTCGAAGTGGTCTCGCTGATGGAGAACAACATCGAGGAGCCCCTGTCGCGCGAAGAGCTAGCA
CGACTCGCAAGCCTGTCGCAGCGGCAGTTGCAGCGCCTGTTCCGCGACCATCTCGGCATGACACCGACGCATTACTATCT
GACGTTGCGCTTGCGCCGTGCGCGCGAGCTGCTGCTGCAGACGGATATGTCGATCATGCACATCACCATGGCATGTGGCT
TCCAGTCCGCGTGCCACTTCAGCAAGAGCTACCGCGACGAGTTCGGCGTCGCGCCTACGCGCGAGCGCAGGGCGCAGAGC
GCGCCACTGGCGAAGTCGTCGGGGCACGGATCGTCTTCAGTGATGCTGCACGCGTGA

Upstream 100 bases:

>100_bases
ATGGCATGCTTGTTGCGGGTGACTTAACAATAAGTAAAAAGCATCGGGCCTTTTCCGCGAAGGCCGGAAACGCACCTTAA
AAAATTTGAAGGACGCCCCC

Downstream 100 bases:

>100_bases
GCGTTCGGGGGAAGCGGCAGTGAAGCACACTGCCTCAAACGGCAAAACGGGCGGCCGCAAATCGACCGCCCGTTTTGTTT
CTGCGCTAATGGTCAGGCCG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 337

Protein sequence:

>338_residues
MSTDRTASLAHFAFMPLPNFTMIAFTNAIEVLRMANYLSGQELYRWSIISPDGGLVTASNGLALDTQRADSIGRPDIVFV
CGGIDVQRSTTAEHLSTLRRAAREGTLLGSLCTGTYALAKSGLLAGYACAIHWENMSALKEEFPDTRFLKELFVIDRDRI
TCTGGVAPLDMMLNLITRRVGTARVTQIAEQFIVEHVRDTSAQQKIPLVARLGSAKKSLFEVVSLMENNIEEPLSREELA
RLASLSQRQLQRLFRDHLGMTPTHYYLTLRLRRARELLLQTDMSIMHITMACGFQSACHFSKSYRDEFGVAPTRERRAQS
APLAKSSGHGSSSVMLHA

Sequences:

>Translated_338_residues
MSTDRTASLAHFAFMPLPNFTMIAFTNAIEVLRMANYLSGQELYRWSIISPDGGLVTASNGLALDTQRADSIGRPDIVFV
CGGIDVQRSTTAEHLSTLRRAAREGTLLGSLCTGTYALAKSGLLAGYACAIHWENMSALKEEFPDTRFLKELFVIDRDRI
TCTGGVAPLDMMLNLITRRVGTARVTQIAEQFIVEHVRDTSAQQKIPLVARLGSAKKSLFEVVSLMENNIEEPLSREELA
RLASLSQRQLQRLFRDHLGMTPTHYYLTLRLRRARELLLQTDMSIMHITMACGFQSACHFSKSYRDEFGVAPTRERRAQS
APLAKSSGHGSSSVMLHA
>Mature_337_residues
STDRTASLAHFAFMPLPNFTMIAFTNAIEVLRMANYLSGQELYRWSIISPDGGLVTASNGLALDTQRADSIGRPDIVFVC
GGIDVQRSTTAEHLSTLRRAAREGTLLGSLCTGTYALAKSGLLAGYACAIHWENMSALKEEFPDTRFLKELFVIDRDRIT
CTGGVAPLDMMLNLITRRVGTARVTQIAEQFIVEHVRDTSAQQKIPLVARLGSAKKSLFEVVSLMENNIEEPLSREELAR
LASLSQRQLQRLFRDHLGMTPTHYYLTLRLRRARELLLQTDMSIMHITMACGFQSACHFSKSYRDEFGVAPTRERRAQSA
PLAKSSGHGSSSVMLHA

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=120, Percent_Identity=30.8333333333333, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37529; Mature: 37398

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTDRTASLAHFAFMPLPNFTMIAFTNAIEVLRMANYLSGQELYRWSIISPDGGLVTASN
CCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEECC
GLALDTQRADSIGRPDIVFVCGGIDVQRSTTAEHLSTLRRAAREGTLLGSLCTGTYALAK
CCEEECHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
SGLLAGYACAIHWENMSALKEEFPDTRFLKELFVIDRDRITCTGGVAPLDMMLNLITRRV
CCCCEEEEEEEEECHHHHHHHHCCCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHH
GTARVTQIAEQFIVEHVRDTSAQQKIPLVARLGSAKKSLFEVVSLMENNIEEPLSREELA
CHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHH
RLASLSQRQLQRLFRDHLGMTPTHYYLTLRLRRARELLLQTDMSIMHITMACGFQSACHF
HHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHH
SKSYRDEFGVAPTRERRAQSAPLAKSSGHGSSSVMLHA
HHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCEEEEC
>Mature Secondary Structure 
STDRTASLAHFAFMPLPNFTMIAFTNAIEVLRMANYLSGQELYRWSIISPDGGLVTASN
CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEECC
GLALDTQRADSIGRPDIVFVCGGIDVQRSTTAEHLSTLRRAAREGTLLGSLCTGTYALAK
CCEEECHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
SGLLAGYACAIHWENMSALKEEFPDTRFLKELFVIDRDRITCTGGVAPLDMMLNLITRRV
CCCCEEEEEEEEECHHHHHHHHCCCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHH
GTARVTQIAEQFIVEHVRDTSAQQKIPLVARLGSAKKSLFEVVSLMENNIEEPLSREELA
CHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHH
RLASLSQRQLQRLFRDHLGMTPTHYYLTLRLRRARELLLQTDMSIMHITMACGFQSACHF
HHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHH
SKSYRDEFGVAPTRERRAQSAPLAKSSGHGSSSVMLHA
HHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]