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The map label for this gene is virS [H]

Identifier: 73538538

GI number: 73538538

Start: 1411280

End: 1412317

Strand: Reverse

Name: virS [H]

Synonym: Reut_B4713

Alternate gene names: 73538538

Gene position: 1412317-1411280 (Counterclockwise)

Preceding gene: 73538543

Following gene: 73538536

Centisome position: 51.81

GC content: 61.95

Gene sequence:

>1038_bases
ATGGCCTATCAGTTGCGCAGTGCCGCACTCACGAACTATGTCGAAGTCGCGCGCGCCGTCGGGCTTGATCCTTACCAGCA
ATTGCGCGCTGCGCGGATCAGCCGATCCGTTCTGCTCGATCCCGACATCCGCATTCCGGCCCAGGCTGTCAGCCGGCTGC
TGGAGTCCTCGGCGAACGCTGCGGGAATCCAGGACTTTGGCTTGCGCATGGCCGAGACACGCCAGCTTTCGAACCTTGGA
CCGCTGGCATTTGCCATGCGGCAGGAGCCCACATTGCGTCGTGCGCTCGAATCGATGGCCCGTTATCTGCGTCTGCAGAA
TGAAGCGATTGCCATGCGTATCGAGGAAGCGGAAGGCCTCGTCATGCTCAGGCAGGAAGCGCTGACGGGCGTTGCCGGAT
CGCTGCGCCAGTCCACCGACCTGGTGGTGGGCGTTCTGTACCGCGTGCTGGCCCTGGTCCTCGGTCCAAAGTGGAGGCCC
CGCAGCATTTGCTTTTCCCACGCAGCGCCGGGCAGCACGGCGATGTACTTGCGTCTGTTTGGCATGCCCGTCCTCTTCAA
CCAGGAGTTCGACGGCATCATCTGCGTGGCGTCGGATCTGGAAGTTCCGCTGCCATCCTACGATCCGACCATGGCAAGGC
AGGTGCAGCAGTACCTCGATACGATGCTTGCCCAGTCCGACGCGACCATCTCGGACAAGGTGAGGCGGCTCGTTCTTGCC
TTATTGCCGTCGGGTGCCTGCACGATCGAGCGGGTAGCTCAGCACATGGGCGTGGATGTCCGCACCGTGCAGCGTCGCCT
TGCCAACTATGACGAGACGTTCTCTGCGATCGTCACCGCGACGCGCGTTGATCTGGCGACTCGTTACCTCGAGAATCGTG
AACGCCCGCTGTCGGAGGTTGCAACGCTGTTGGGCTTTGGCTCGCTCAGCGCTTTCTCCCGCTGGTTTGGCGGGCACTTT
GGTTGCAGCGTTTCAAAATGGAGAGCCAAGGGCTTTGCCAAAGCCGTCAAGAAGGAGGGAGCCGGGCGATCGCATTGA

Upstream 100 bases:

>100_bases
CGACCCCTGAAGTCTGGATTATTGGCTGGAATGAATTTGACCAAATACGGCATCAATTTTACAATTGACGACATCTGGGG
CGAGAGACGGAGACGTGCCG

Downstream 100 bases:

>100_bases
ACGAGCGTGCGGCCCATGCTGAGCAGAGCCGACGTTCGACCGTCCATACGCCACGGACGAACAGCGTCTCCTTGCCTGAC
AGGCGACCCTCCCGCCGGTG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 344

Protein sequence:

>345_residues
MAYQLRSAALTNYVEVARAVGLDPYQQLRAARISRSVLLDPDIRIPAQAVSRLLESSANAAGIQDFGLRMAETRQLSNLG
PLAFAMRQEPTLRRALESMARYLRLQNEAIAMRIEEAEGLVMLRQEALTGVAGSLRQSTDLVVGVLYRVLALVLGPKWRP
RSICFSHAAPGSTAMYLRLFGMPVLFNQEFDGIICVASDLEVPLPSYDPTMARQVQQYLDTMLAQSDATISDKVRRLVLA
LLPSGACTIERVAQHMGVDVRTVQRRLANYDETFSAIVTATRVDLATRYLENRERPLSEVATLLGFGSLSAFSRWFGGHF
GCSVSKWRAKGFAKAVKKEGAGRSH

Sequences:

>Translated_345_residues
MAYQLRSAALTNYVEVARAVGLDPYQQLRAARISRSVLLDPDIRIPAQAVSRLLESSANAAGIQDFGLRMAETRQLSNLG
PLAFAMRQEPTLRRALESMARYLRLQNEAIAMRIEEAEGLVMLRQEALTGVAGSLRQSTDLVVGVLYRVLALVLGPKWRP
RSICFSHAAPGSTAMYLRLFGMPVLFNQEFDGIICVASDLEVPLPSYDPTMARQVQQYLDTMLAQSDATISDKVRRLVLA
LLPSGACTIERVAQHMGVDVRTVQRRLANYDETFSAIVTATRVDLATRYLENRERPLSEVATLLGFGSLSAFSRWFGGHF
GCSVSKWRAKGFAKAVKKEGAGRSH
>Mature_344_residues
AYQLRSAALTNYVEVARAVGLDPYQQLRAARISRSVLLDPDIRIPAQAVSRLLESSANAAGIQDFGLRMAETRQLSNLGP
LAFAMRQEPTLRRALESMARYLRLQNEAIAMRIEEAEGLVMLRQEALTGVAGSLRQSTDLVVGVLYRVLALVLGPKWRPR
SICFSHAAPGSTAMYLRLFGMPVLFNQEFDGIICVASDLEVPLPSYDPTMARQVQQYLDTMLAQSDATISDKVRRLVLAL
LPSGACTIERVAQHMGVDVRTVQRRLANYDETFSAIVTATRVDLATRYLENRERPLSEVATLLGFGSLSAFSRWFGGHFG
CSVSKWRAKGFAKAVKKEGAGRSH

Specific function: May have a role in the regulation of proteins necessary for virulence [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38109; Mature: 37977

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYQLRSAALTNYVEVARAVGLDPYQQLRAARISRSVLLDPDIRIPAQAVSRLLESSANA
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC
AGIQDFGLRMAETRQLSNLGPLAFAMRQEPTLRRALESMARYLRLQNEAIAMRIEEAEGL
CCHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHEEEECCCCCH
VMLRQEALTGVAGSLRQSTDLVVGVLYRVLALVLGPKWRPRSICFSHAAPGSTAMYLRLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHH
GMPVLFNQEFDGIICVASDLEVPLPSYDPTMARQVQQYLDTMLAQSDATISDKVRRLVLA
CCCCEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LLPSGACTIERVAQHMGVDVRTVQRRLANYDETFSAIVTATRVDLATRYLENRERPLSEV
HHCCCCHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
ATLLGFGSLSAFSRWFGGHFGCSVSKWRAKGFAKAVKKEGAGRSH
HHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AYQLRSAALTNYVEVARAVGLDPYQQLRAARISRSVLLDPDIRIPAQAVSRLLESSANA
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC
AGIQDFGLRMAETRQLSNLGPLAFAMRQEPTLRRALESMARYLRLQNEAIAMRIEEAEGL
CCHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHEEEECCCCCH
VMLRQEALTGVAGSLRQSTDLVVGVLYRVLALVLGPKWRPRSICFSHAAPGSTAMYLRLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHH
GMPVLFNQEFDGIICVASDLEVPLPSYDPTMARQVQQYLDTMLAQSDATISDKVRRLVLA
CCCCEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LLPSGACTIERVAQHMGVDVRTVQRRLANYDETFSAIVTATRVDLATRYLENRERPLSEV
HHCCCCHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
ATLLGFGSLSAFSRWFGGHFGCSVSKWRAKGFAKAVKKEGAGRSH
HHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8472958; 9634230; 12218036 [H]