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The map label for this gene is yhjC [H]

Identifier: 73538167

GI number: 73538167

Start: 997353

End: 998294

Strand: Direct

Name: yhjC [H]

Synonym: Reut_B4337

Alternate gene names: 73538167

Gene position: 997353-998294 (Clockwise)

Preceding gene: 73538159

Following gene: 73538168

Centisome position: 36.58

GC content: 64.54

Gene sequence:

>942_bases
ATGGATCGTCTCGTCTCAATGCAGGCCTTTACCCGAGTGGTCGACATGGGCAGCTTCGCGCGTGCCGCCGACTCTCTCGA
CCTGCCCAAGGCCACCCTCACCCGTTTGATCCAGAACCTGGAGACGCACCTGGGCGTCAAGCTGCTGCACCGGACCACCC
GGCGCATCAGCGTGACCAGCGACGGTGCCGCCTACTACGAGCGGTGCGTGCGCATCCTGGCCGATGTGGAGGAAGCCGAG
CAATCGCTGACGCGCCACAACAACTCGCCCAAGGGCACGCTGTCGGTGGACACCACCGCCGGGCTGGCCCGCATCGCGCT
GATCCCGCATCTGCACGACTTCTTCGCGGCCTACCCGGAACTGAAGCTGGACCTGACCATCAACGGCAAGCCGATCGACC
TGCTGCAGGAAGGCGTCGACGTAGTGTTGCGTGTAGGGGCGGTGGACGAATCCATGGTGGCGCGGCGCATCGGCCAGCTC
AAACTGGCGTTCTTCGCGTCGCCGATCTACCTGAATCGTTTTGGCACGCCGCATGAGTTGGCGGACCTTGCCCAGCACAA
GGCCGTCAATCACCTGTCCAACCGCACCGGGCGCGAATGGCCATGGCAGTTCACGCGCGGGAACGAGAGCACCGAGATCC
TGCTTCCATCCGCCATTTCCACGAACGATGGGGATGTCTACCTGGAATGCACGCTCGCGGGCCACGGGCTGGCCTGCCTG
TCGCGCGTGATGGCCGAACCGTACGTGGCCAGCGGCCGGCTGGTCGAAGTCATGTCTGACTGGCAGAGCGAGGAGCTGCC
GATTTCCGCCATGTATCCGCAGAATCGCCACCTGTCCGCCAAGGTTCGCGTATTCGTCAACTGGGTCGCGGACATTTTTG
GCCGGCACCCGCACTTCGGTGCCGCACCGCAGCAAGGTGGGGTAACGCAGCTGGCCGCGTAG

Upstream 100 bases:

>100_bases
CGGACCCGGGAAGCCAGCACCACCCCCGCAGCCACTCCATACATTCGCGCAGGTCGCCCCGCTCGGCGAGCCGTCAGGAA
ACATTCGTCGGAAGCTCATC

Downstream 100 bases:

>100_bases
GCGCGCCTGTTATTCGCCGCTCAATCCGCGCCACCGGGTAAGCGTCGCATCCTATACTGTTTCTTCCGCAATAAGGTGAA
TGGGAGGGTTCCGATGAAAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MDRLVSMQAFTRVVDMGSFARAADSLDLPKATLTRLIQNLETHLGVKLLHRTTRRISVTSDGAAYYERCVRILADVEEAE
QSLTRHNNSPKGTLSVDTTAGLARIALIPHLHDFFAAYPELKLDLTINGKPIDLLQEGVDVVLRVGAVDESMVARRIGQL
KLAFFASPIYLNRFGTPHELADLAQHKAVNHLSNRTGREWPWQFTRGNESTEILLPSAISTNDGDVYLECTLAGHGLACL
SRVMAEPYVASGRLVEVMSDWQSEELPISAMYPQNRHLSAKVRVFVNWVADIFGRHPHFGAAPQQGGVTQLAA

Sequences:

>Translated_313_residues
MDRLVSMQAFTRVVDMGSFARAADSLDLPKATLTRLIQNLETHLGVKLLHRTTRRISVTSDGAAYYERCVRILADVEEAE
QSLTRHNNSPKGTLSVDTTAGLARIALIPHLHDFFAAYPELKLDLTINGKPIDLLQEGVDVVLRVGAVDESMVARRIGQL
KLAFFASPIYLNRFGTPHELADLAQHKAVNHLSNRTGREWPWQFTRGNESTEILLPSAISTNDGDVYLECTLAGHGLACL
SRVMAEPYVASGRLVEVMSDWQSEELPISAMYPQNRHLSAKVRVFVNWVADIFGRHPHFGAAPQQGGVTQLAA
>Mature_313_residues
MDRLVSMQAFTRVVDMGSFARAADSLDLPKATLTRLIQNLETHLGVKLLHRTTRRISVTSDGAAYYERCVRILADVEEAE
QSLTRHNNSPKGTLSVDTTAGLARIALIPHLHDFFAAYPELKLDLTINGKPIDLLQEGVDVVLRVGAVDESMVARRIGQL
KLAFFASPIYLNRFGTPHELADLAQHKAVNHLSNRTGREWPWQFTRGNESTEILLPSAISTNDGDVYLECTLAGHGLACL
SRVMAEPYVASGRLVEVMSDWQSEELPISAMYPQNRHLSAKVRVFVNWVADIFGRHPHFGAAPQQGGVTQLAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=297, Percent_Identity=34.6801346801347, Blast_Score=201, Evalue=5e-53,
Organism=Escherichia coli, GI1786401, Length=305, Percent_Identity=33.4426229508197, Blast_Score=175, Evalue=3e-45,
Organism=Escherichia coli, GI1789639, Length=294, Percent_Identity=32.6530612244898, Blast_Score=159, Evalue=3e-40,
Organism=Escherichia coli, GI1787128, Length=282, Percent_Identity=31.2056737588652, Blast_Score=144, Evalue=7e-36,
Organism=Escherichia coli, GI1787589, Length=288, Percent_Identity=28.125, Blast_Score=141, Evalue=7e-35,
Organism=Escherichia coli, GI1789440, Length=285, Percent_Identity=27.3684210526316, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI87081978, Length=298, Percent_Identity=30.5369127516779, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1789173, Length=261, Percent_Identity=27.5862068965517, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1786448, Length=290, Percent_Identity=24.1379310344828, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788706, Length=263, Percent_Identity=23.574144486692, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788481, Length=301, Percent_Identity=23.9202657807309, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87082132, Length=307, Percent_Identity=24.1042345276873, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34605; Mature: 34605

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLVSMQAFTRVVDMGSFARAADSLDLPKATLTRLIQNLETHLGVKLLHRTTRRISVTS
CCCHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC
DGAAYYERCVRILADVEEAEQSLTRHNNSPKGTLSVDTTAGLARIALIPHLHDFFAAYPE
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCC
LKLDLTINGKPIDLLQEGVDVVLRVGAVDESMVARRIGQLKLAFFASPIYLNRFGTPHEL
EEEEEEECCCCHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHCCCHHEECCCCHHHH
ADLAQHKAVNHLSNRTGREWPWQFTRGNESTEILLPSAISTNDGDVYLECTLAGHGLACL
HHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEECCCCCCCCCCEEEEEEECCCCHHHH
SRVMAEPYVASGRLVEVMSDWQSEELPISAMYPQNRHLSAKVRVFVNWVADIFGRHPHFG
HHHHHCCCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCC
AAPQQGGVTQLAA
CCCCCCCCHHCCC
>Mature Secondary Structure
MDRLVSMQAFTRVVDMGSFARAADSLDLPKATLTRLIQNLETHLGVKLLHRTTRRISVTS
CCCHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC
DGAAYYERCVRILADVEEAEQSLTRHNNSPKGTLSVDTTAGLARIALIPHLHDFFAAYPE
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCC
LKLDLTINGKPIDLLQEGVDVVLRVGAVDESMVARRIGQLKLAFFASPIYLNRFGTPHEL
EEEEEEECCCCHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHCCCHHEECCCCHHHH
ADLAQHKAVNHLSNRTGREWPWQFTRGNESTEILLPSAISTNDGDVYLECTLAGHGLACL
HHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEECCCCCCCCCCEEEEEEECCCCHHHH
SRVMAEPYVASGRLVEVMSDWQSEELPISAMYPQNRHLSAKVRVFVNWVADIFGRHPHFG
HHHHHCCCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCC
AAPQQGGVTQLAA
CCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]