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The map label for this gene is yfdE [H]

Identifier: 73541796

GI number: 73541796

Start: 2316770

End: 2317966

Strand: Reverse

Name: yfdE [H]

Synonym: Reut_A2108

Alternate gene names: 73541796

Gene position: 2317966-2316770 (Counterclockwise)

Preceding gene: 73541797

Following gene: 73541795

Centisome position: 60.89

GC content: 66.83

Gene sequence:

>1197_bases
ATGGCGCAACAGATTCTCGAGGGCATCCGCGTCCTCGAACTCGGGCAACTGATTGCCGGCCCTTTTGCCGCCAAGACCCT
GGCCGACTTCGGCGCCCACGTGGTCAAGGTCGAGCCGCCGGGCCTGGGCGATCCGCTGCGCAAATGGCGCATGCTGCATG
AGGGCACATCGGTCTGGTGGGAAGCGCAGTCGCGCAATAAAGAATCAGTCTGCATCGACCTGCGCCAGCCCGAAGGCCAG
GCGCTGGTGCGCAAGCTGGCCGCCGAAGCCGATGTGCTGATCGAGAATTTCCGCCCCGGCACCATGGAAAAGTGGGGCCT
CGGTTGGGACGTGCTGCACGCCGACAATCCGCGCCTGATCATGCTGCGTGTGTCTGGCTATGGCCAGACGGGCCCGAAGA
AGGACGAACCGGGGTTTGCCGCCGTGGCCGAAGCCATGGCCGGCCTGCGCCACCTGACCGGCGAGCCGGGCCGGGCTCCC
GTACGTGCCGGCCTGTCGCTGGGCGACACGATCGCCGGACTGCACGGTGCGATGGGCGTGCTGCTGGCCCTCTACCAGCG
CGATGCGCGTGGCGGGGAGGGGCAGGTCATCGACGTGGCGCTGTACGAGTCGCTGTTCAATCTCAGTGAAAGCTTGCTGC
CGGAATACTCGGCATTCGGCGCGGTGCGCCAGCCAGCCGGCGGCGCGCTGCCCGGCATTGCGCCATCGAACGCGTATCCG
TGCCAGAGCGGCGAGTATGTACTGGTGGCGGCCAACGGCGATGCCATCTTCAAGCGCATGATGCATGCGATCGGCCGCGC
CGACCTGGCCGAGGACCCGGCGCTCGCACAGAACGATGGCCGTGTGAAGCGTGTCGAGGAAATCGATGCCGCGATCGCTG
CCTGGACCAGCACGCAAAGCGTGGAAGCTGTGCTCGCCGTGCTGCGCGAGGCCGAGGTACCGTCTGGGCGCATCTACACC
GTCAAGGACATCGCTGAAGACCCGCACTACCGTGCGCGTGGCGTGATCGAATCCGTCACGTCGGCCGGCGGCCTGACCGT
GGAAGTGCCCGGCATCATGCCGAAACTGTCGGGCAGTCCCGGCGCGATCCATGACCGCGCGCCGACACTGGGCGAGCACA
CCGACACGGTGCTGGAACAGGCAGGGTTTGACGCAGCAGCCATCGCCGATCTGCGCGCACGCAAGGTAATCGCATGA

Upstream 100 bases:

>100_bases
CACCGATTGCCGATTCCGGCCAGCCCGCCGCTGGGGCAAACTCCGTCGAAACGCAAACACGCCCGCAACGCTCAGCGGGC
CGCACCGTACGGAGACAACC

Downstream 100 bases:

>100_bases
GCGCCGCCGAATTCAACTCCCCGGCCTTGCGCGGCCCAGCCCGTATCGAGATCAACGAAGTGTCGCCTCGCGACGGCCTG
CAGATCGAGCCGGTCGTGGT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 397

Protein sequence:

>398_residues
MAQQILEGIRVLELGQLIAGPFAAKTLADFGAHVVKVEPPGLGDPLRKWRMLHEGTSVWWEAQSRNKESVCIDLRQPEGQ
ALVRKLAAEADVLIENFRPGTMEKWGLGWDVLHADNPRLIMLRVSGYGQTGPKKDEPGFAAVAEAMAGLRHLTGEPGRAP
VRAGLSLGDTIAGLHGAMGVLLALYQRDARGGEGQVIDVALYESLFNLSESLLPEYSAFGAVRQPAGGALPGIAPSNAYP
CQSGEYVLVAANGDAIFKRMMHAIGRADLAEDPALAQNDGRVKRVEEIDAAIAAWTSTQSVEAVLAVLREAEVPSGRIYT
VKDIAEDPHYRARGVIESVTSAGGLTVEVPGIMPKLSGSPGAIHDRAPTLGEHTDTVLEQAGFDAAAIADLRARKVIA

Sequences:

>Translated_398_residues
MAQQILEGIRVLELGQLIAGPFAAKTLADFGAHVVKVEPPGLGDPLRKWRMLHEGTSVWWEAQSRNKESVCIDLRQPEGQ
ALVRKLAAEADVLIENFRPGTMEKWGLGWDVLHADNPRLIMLRVSGYGQTGPKKDEPGFAAVAEAMAGLRHLTGEPGRAP
VRAGLSLGDTIAGLHGAMGVLLALYQRDARGGEGQVIDVALYESLFNLSESLLPEYSAFGAVRQPAGGALPGIAPSNAYP
CQSGEYVLVAANGDAIFKRMMHAIGRADLAEDPALAQNDGRVKRVEEIDAAIAAWTSTQSVEAVLAVLREAEVPSGRIYT
VKDIAEDPHYRARGVIESVTSAGGLTVEVPGIMPKLSGSPGAIHDRAPTLGEHTDTVLEQAGFDAAAIADLRARKVIA
>Mature_397_residues
AQQILEGIRVLELGQLIAGPFAAKTLADFGAHVVKVEPPGLGDPLRKWRMLHEGTSVWWEAQSRNKESVCIDLRQPEGQA
LVRKLAAEADVLIENFRPGTMEKWGLGWDVLHADNPRLIMLRVSGYGQTGPKKDEPGFAAVAEAMAGLRHLTGEPGRAPV
RAGLSLGDTIAGLHGAMGVLLALYQRDARGGEGQVIDVALYESLFNLSESLLPEYSAFGAVRQPAGGALPGIAPSNAYPC
QSGEYVLVAANGDAIFKRMMHAIGRADLAEDPALAQNDGRVKRVEEIDAAIAAWTSTQSVEAVLAVLREAEVPSGRIYTV
KDIAEDPHYRARGVIESVTSAGGLTVEVPGIMPKLSGSPGAIHDRAPTLGEHTDTVLEQAGFDAAAIADLRARKVIA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=394, Percent_Identity=30.2030456852792, Blast_Score=191, Evalue=9e-49,
Organism=Homo sapiens, GI300863124, Length=420, Percent_Identity=29.0476190476191, Blast_Score=180, Evalue=2e-45,
Organism=Homo sapiens, GI300863126, Length=394, Percent_Identity=28.1725888324873, Blast_Score=156, Evalue=4e-38,
Organism=Homo sapiens, GI42794625, Length=398, Percent_Identity=32.4120603015075, Blast_Score=151, Evalue=9e-37,
Organism=Homo sapiens, GI266456254, Length=398, Percent_Identity=32.4120603015075, Blast_Score=151, Evalue=9e-37,
Organism=Homo sapiens, GI266458393, Length=298, Percent_Identity=34.8993288590604, Blast_Score=134, Evalue=1e-31,
Organism=Homo sapiens, GI13376042, Length=420, Percent_Identity=26.1904761904762, Blast_Score=134, Evalue=2e-31,
Organism=Homo sapiens, GI266458397, Length=250, Percent_Identity=39.2, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI266458395, Length=126, Percent_Identity=46.031746031746, Blast_Score=105, Evalue=8e-23,
Organism=Homo sapiens, GI42822893, Length=126, Percent_Identity=45.2380952380952, Blast_Score=104, Evalue=2e-22,
Organism=Escherichia coli, GI87082093, Length=376, Percent_Identity=33.5106382978723, Blast_Score=214, Evalue=8e-57,
Organism=Escherichia coli, GI1788717, Length=420, Percent_Identity=27.6190476190476, Blast_Score=154, Evalue=1e-38,
Organism=Escherichia coli, GI1786222, Length=397, Percent_Identity=26.1964735516373, Blast_Score=137, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI115535051, Length=275, Percent_Identity=32.3636363636364, Blast_Score=109, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI32564160, Length=282, Percent_Identity=30.1418439716312, Blast_Score=101, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24648431, Length=396, Percent_Identity=33.0808080808081, Blast_Score=217, Evalue=1e-56,
Organism=Drosophila melanogaster, GI24585488, Length=363, Percent_Identity=28.9256198347107, Blast_Score=119, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42305; Mature: 42174

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQQILEGIRVLELGQLIAGPFAAKTLADFGAHVVKVEPPGLGDPLRKWRMLHEGTSVWW
CHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHCCCCEEE
EAQSRNKESVCIDLRQPEGQALVRKLAAEADVLIENFRPGTMEKWGLGWDVLHADNPRLI
ECCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCEEEEECCCCEEE
MLRVSGYGQTGPKKDEPGFAAVAEAMAGLRHLTGEPGRAPVRAGLSLGDTIAGLHGAMGV
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCHHHHHHHHHHHH
LLALYQRDARGGEGQVIDVALYESLFNLSESLLPEYSAFGAVRQPAGGALPGIAPSNAYP
HHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCC
CQSGEYVLVAANGDAIFKRMMHAIGRADLAEDPALAQNDGRVKRVEEIDAAIAAWTSTQS
CCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHH
VEAVLAVLREAEVPSGRIYTVKDIAEDPHYRARGVIESVTSAGGLTVEVPGIMPKLSGSP
HHHHHHHHHHCCCCCCCEEEEHHHCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
GAIHDRAPTLGEHTDTVLEQAGFDAAAIADLRARKVIA
CCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
AQQILEGIRVLELGQLIAGPFAAKTLADFGAHVVKVEPPGLGDPLRKWRMLHEGTSVWW
HHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHCCCCEEE
EAQSRNKESVCIDLRQPEGQALVRKLAAEADVLIENFRPGTMEKWGLGWDVLHADNPRLI
ECCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCEEEEECCCCEEE
MLRVSGYGQTGPKKDEPGFAAVAEAMAGLRHLTGEPGRAPVRAGLSLGDTIAGLHGAMGV
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCHHHHHHHHHHHH
LLALYQRDARGGEGQVIDVALYESLFNLSESLLPEYSAFGAVRQPAGGALPGIAPSNAYP
HHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCC
CQSGEYVLVAANGDAIFKRMMHAIGRADLAEDPALAQNDGRVKRVEEIDAAIAAWTSTQS
CCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHH
VEAVLAVLREAEVPSGRIYTVKDIAEDPHYRARGVIESVTSAGGLTVEVPGIMPKLSGSP
HHHHHHHHHHCCCCCCCEEEEHHHCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
GAIHDRAPTLGEHTDTVLEQAGFDAAAIADLRARKVIA
CCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]