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The map label for this gene is ybhD [H]

Identifier: 73541797

GI number: 73541797

Start: 2318114

End: 2319019

Strand: Reverse

Name: ybhD [H]

Synonym: Reut_A2109

Alternate gene names: 73541797

Gene position: 2319019-2318114 (Counterclockwise)

Preceding gene: 73541798

Following gene: 73541796

Centisome position: 60.92

GC content: 66.67

Gene sequence:

>906_bases
ATGAACCTGGCCCGCTTCGATCTTGTCACGCTCGGCTTGTTCGTGGCCGTCGTCCGGCAGGGCAGCATTTCGGCGGGAGC
GAGGCAGTCGCACCTGGCCGTGGCCGCCGCAAGCAAGCGCATTTCGGATCTGGAAGCAGCAGTGGGCGCCCCGCTGTTTT
TCCGTCATGCCGCGGGCGTGCAGCTGACCGAAGCCGGGCAGGCCTGCTACCACCATGCGCTGACGATCCTACAGGACGTG
GAGCGCATGGCCGGGGTGATGTCCGACTATGCAAGCGGCGTGCGCGGCCAGGTGCGCGTCTGCGCCAATACCTCCGCCAT
CACGCAGTTTCTGCCTGACGACCTGGCGGTTTTCATGCGGCTGCATCCGACCATTCGCATCGAGCTCGAAGAGCAGAACA
GCAGCGACATCGTCGCGGCGCTGGTCGAGAATCGCGCCGACGTCGGCATCTTTGCCGATCGCACGCCGTGCGCGGGCCTG
GTGACCGTGGAGTACCGCCAGGATGAACTGGTCATGGTCACGCCGCCGGGCCACCCCTTGTCCGAGCGTGGGCCGGTGCG
CTACGCCGACACCCTCGAATTCGACTTTGTTAGCCTGCCGCAGGTGACTTCCCTTGCCGCGCGCCTGCTCGAGGAAAGCA
GCCGGCTGGACCGCCCGTTCCGGCTGCGCATCCAGGTGCGCAGCTTTGACGCCATGTGCCGCATGGTGATGGCCGGCCTT
GGCGTGGGCGTGCTGCCGCGCATCGCGGCCGAACCGCATGTGAAGTCGATGGGACTATCGCTGGTGTCGCTGCAGGATGC
CTGGGCGAAGCGCTCGCTGCTGATCGGCATGCGCGACCCGGCCGGCCTGACGGTTTCGGCGCGGCTGCTCATTTCACATC
TTTGCGGCGACCGCGCGCCGTTCTAA

Upstream 100 bases:

>100_bases
CCGCGCGGTGATGGACCGCCGCAATCTCTGAGGCTGGCGCACTCCGCATCATGACCTGCTCCGAACTGCCTCTCGCTAAC
CGACTCCTGCACTGCCCGCA

Downstream 100 bases:

>100_bases
TCACATCTGCAAGCCGCAGGCCTTTCGCATTCGGAGAAAGCCCGCTTCACCGATTGCCGATTCCGGCCAGCCCGCCGCTG
GGGCAAACTCCGTCGAAACG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MNLARFDLVTLGLFVAVVRQGSISAGARQSHLAVAAASKRISDLEAAVGAPLFFRHAAGVQLTEAGQACYHHALTILQDV
ERMAGVMSDYASGVRGQVRVCANTSAITQFLPDDLAVFMRLHPTIRIELEEQNSSDIVAALVENRADVGIFADRTPCAGL
VTVEYRQDELVMVTPPGHPLSERGPVRYADTLEFDFVSLPQVTSLAARLLEESSRLDRPFRLRIQVRSFDAMCRMVMAGL
GVGVLPRIAAEPHVKSMGLSLVSLQDAWAKRSLLIGMRDPAGLTVSARLLISHLCGDRAPF

Sequences:

>Translated_301_residues
MNLARFDLVTLGLFVAVVRQGSISAGARQSHLAVAAASKRISDLEAAVGAPLFFRHAAGVQLTEAGQACYHHALTILQDV
ERMAGVMSDYASGVRGQVRVCANTSAITQFLPDDLAVFMRLHPTIRIELEEQNSSDIVAALVENRADVGIFADRTPCAGL
VTVEYRQDELVMVTPPGHPLSERGPVRYADTLEFDFVSLPQVTSLAARLLEESSRLDRPFRLRIQVRSFDAMCRMVMAGL
GVGVLPRIAAEPHVKSMGLSLVSLQDAWAKRSLLIGMRDPAGLTVSARLLISHLCGDRAPF
>Mature_301_residues
MNLARFDLVTLGLFVAVVRQGSISAGARQSHLAVAAASKRISDLEAAVGAPLFFRHAAGVQLTEAGQACYHHALTILQDV
ERMAGVMSDYASGVRGQVRVCANTSAITQFLPDDLAVFMRLHPTIRIELEEQNSSDIVAALVENRADVGIFADRTPCAGL
VTVEYRQDELVMVTPPGHPLSERGPVRYADTLEFDFVSLPQVTSLAARLLEESSRLDRPFRLRIQVRSFDAMCRMVMAGL
GVGVLPRIAAEPHVKSMGLSLVSLQDAWAKRSLLIGMRDPAGLTVSARLLISHLCGDRAPF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=300, Percent_Identity=24.3333333333333, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787601, Length=171, Percent_Identity=29.2397660818713, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788481, Length=263, Percent_Identity=26.2357414448669, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI157672245, Length=171, Percent_Identity=28.0701754385965, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1788297, Length=283, Percent_Identity=25.7950530035336, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790208, Length=253, Percent_Identity=24.901185770751, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787879, Length=265, Percent_Identity=26.0377358490566, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI87081904, Length=203, Percent_Identity=30.5418719211823, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789204, Length=248, Percent_Identity=22.9838709677419, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788887, Length=245, Percent_Identity=27.3469387755102, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1789440, Length=120, Percent_Identity=31.6666666666667, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786401, Length=142, Percent_Identity=30.2816901408451, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786713, Length=292, Percent_Identity=26.027397260274, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1786508, Length=247, Percent_Identity=23.4817813765182, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787806, Length=242, Percent_Identity=23.9669421487603, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32644; Mature: 32644

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLARFDLVTLGLFVAVVRQGSISAGARQSHLAVAAASKRISDLEAAVGAPLFFRHAAGV
CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC
QLTEAGQACYHHALTILQDVERMAGVMSDYASGVRGQVRVCANTSAITQFLPDDLAVFMR
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHCHHHHHHHHH
LHPTIRIELEEQNSSDIVAALVENRADVGIFADRTPCAGLVTVEYRQDELVMVTPPGHPL
CCCEEEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCCEEEEEEECCCCEEEECCCCCCC
SERGPVRYADTLEFDFVSLPQVTSLAARLLEESSRLDRPFRLRIQVRSFDAMCRMVMAGL
CCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHC
GVGVLPRIAAEPHVKSMGLSLVSLQDAWAKRSLLIGMRDPAGLTVSARLLISHLCGDRAP
CCCHHHHHCCCCCHHHHCCHHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHHHCCCCC
F
C
>Mature Secondary Structure
MNLARFDLVTLGLFVAVVRQGSISAGARQSHLAVAAASKRISDLEAAVGAPLFFRHAAGV
CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC
QLTEAGQACYHHALTILQDVERMAGVMSDYASGVRGQVRVCANTSAITQFLPDDLAVFMR
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHCHHHHHHHHH
LHPTIRIELEEQNSSDIVAALVENRADVGIFADRTPCAGLVTVEYRQDELVMVTPPGHPL
CCCEEEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCCEEEEEEECCCCEEEECCCCCCC
SERGPVRYADTLEFDFVSLPQVTSLAARLLEESSRLDRPFRLRIQVRSFDAMCRMVMAGL
CCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHC
GVGVLPRIAAEPHVKSMGLSLVSLQDAWAKRSLLIGMRDPAGLTVSARLLISHLCGDRAP
CCCHHHHHCCCCCHHHHCCHHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHHHCCCCC
F
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]