Click here to switch to the map view.

The map label for this gene is dppB [H]

Identifier: 73540936

GI number: 73540936

Start: 1325990

End: 1326961

Strand: Direct

Name: dppB [H]

Synonym: Reut_A1241

Alternate gene names: 73540936

Gene position: 1325990-1326961 (Clockwise)

Preceding gene: 73540935

Following gene: 73540937

Centisome position: 34.83

GC content: 64.61

Gene sequence:

>972_bases
ATGCTGGAAACCCTTCTCAAACGGCTGCTGCAGAGCATTGTGGTGCTCTGGATCATGTCCGTCCTGACCTTCTGCGCCGT
GAATCTGATCGGCGATCCGGTGCACCTGCTGGTGAGCCCGACCGCGACCGAGCAGGAGATTGCCGAGGCGCGCCACTCGC
TCGGGCTGGACTTGCCTGTGCAGCAGCAGTACCTGCATTTCGTGCAGGGCGCGCTGCACGGCGACCTCGGCGATTCGTTC
ATCTACAACCGGCCCGCGATCGAGCTGATCGTCAGCCGGATTCCGGCCACGCTGGAACTGGCAGTGACCGCGCTGCTGCT
GTCGCTGGCCATTGGCATCCCGATGGGCATCTTCGCGGGCCTGAAGCCTGCGAGCCGCCTGTCGCGGCTGCTGATGGCGT
GCTCGCTCGGCGGCGTGATCATGCCGACGTTCTGGATCGGCATGATCGGCATCCTCGTGTTCTCGGTGAACCTGGGCTGG
CTACCGTCGGGCGGACGCGGGCCGATCAGCACGGTGCTCGGCATGCCGCTGTCCGTGACGAGCTGGGAGGGCATCCGTTT
CCTGCTGCTGCCGGCGCTAACGCTGTCGCTGTTCAAGATTTCGCTGGTGGCGCGGCTGACGGAAGCCGGCACGCGAGAAG
TAGCGGGGCAGGAGTACATCAAGTTCGCGCGAGCGAAGGGCGTGGGTGGCGCGCGGCTGGTGCTACGCCATGTGGTGCCC
AATGTGCTGATCCCGATCGTGACCGTGGTCGGGCTCGAGTTCGGCCATCTGATCGCGTTCTCGGTCGTGACCGAATCGGT
GTTCTCGTGGCCCGGCATGGGCAAGCTGATCATCGACTCGGTGTTGGCGCTGGACCGGCCGGTTGTCGTGGCTTACCTGC
TCGTCACGCTGGTGTTGTTCGTGGTGCTCAACCTGATCGTCGACCTGCTTTACGTATTGCTCGATCCGCGCCTGCGCCAC
AAGGCAGCCTGA

Upstream 100 bases:

>100_bases
GGCCTGGCCGTGAAGCCGCGCAGCGATGGCTTCACCTACGCCATGAACATTCGACCGGCCGCACGCCCCTGAGGCACCGC
AGCCATCCCCGGAAGCAACC

Downstream 100 bases:

>100_bases
ACCCCTTTTTTGAACCTGTCATTCGCCAAGTTTTACGATGTCCATCCCTGCAACTGAACCCGGTACGACGGGTGCGCCGC
TGGCGTCTGCCAGCGCGCCG

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MLETLLKRLLQSIVVLWIMSVLTFCAVNLIGDPVHLLVSPTATEQEIAEARHSLGLDLPVQQQYLHFVQGALHGDLGDSF
IYNRPAIELIVSRIPATLELAVTALLLSLAIGIPMGIFAGLKPASRLSRLLMACSLGGVIMPTFWIGMIGILVFSVNLGW
LPSGGRGPISTVLGMPLSVTSWEGIRFLLLPALTLSLFKISLVARLTEAGTREVAGQEYIKFARAKGVGGARLVLRHVVP
NVLIPIVTVVGLEFGHLIAFSVVTESVFSWPGMGKLIIDSVLALDRPVVVAYLLVTLVLFVVLNLIVDLLYVLLDPRLRH
KAA

Sequences:

>Translated_323_residues
MLETLLKRLLQSIVVLWIMSVLTFCAVNLIGDPVHLLVSPTATEQEIAEARHSLGLDLPVQQQYLHFVQGALHGDLGDSF
IYNRPAIELIVSRIPATLELAVTALLLSLAIGIPMGIFAGLKPASRLSRLLMACSLGGVIMPTFWIGMIGILVFSVNLGW
LPSGGRGPISTVLGMPLSVTSWEGIRFLLLPALTLSLFKISLVARLTEAGTREVAGQEYIKFARAKGVGGARLVLRHVVP
NVLIPIVTVVGLEFGHLIAFSVVTESVFSWPGMGKLIIDSVLALDRPVVVAYLLVTLVLFVVLNLIVDLLYVLLDPRLRH
KAA
>Mature_323_residues
MLETLLKRLLQSIVVLWIMSVLTFCAVNLIGDPVHLLVSPTATEQEIAEARHSLGLDLPVQQQYLHFVQGALHGDLGDSF
IYNRPAIELIVSRIPATLELAVTALLLSLAIGIPMGIFAGLKPASRLSRLLMACSLGGVIMPTFWIGMIGILVFSVNLGW
LPSGGRGPISTVLGMPLSVTSWEGIRFLLLPALTLSLFKISLVARLTEAGTREVAGQEYIKFARAKGVGGARLVLRHVVP
NVLIPIVTVVGLEFGHLIAFSVVTESVFSWPGMGKLIIDSVLALDRPVVVAYLLVTLVLFVVLNLIVDLLYVLLDPRLRH
KAA

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=322, Percent_Identity=39.4409937888199, Blast_Score=226, Evalue=2e-60,
Organism=Escherichia coli, GI1789965, Length=342, Percent_Identity=37.1345029239766, Blast_Score=220, Evalue=9e-59,
Organism=Escherichia coli, GI1789888, Length=329, Percent_Identity=36.1702127659575, Blast_Score=191, Evalue=4e-50,
Organism=Escherichia coli, GI1787761, Length=328, Percent_Identity=39.3292682926829, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI1787497, Length=324, Percent_Identity=29.9382716049383, Blast_Score=167, Evalue=7e-43,
Organism=Escherichia coli, GI1787550, Length=275, Percent_Identity=33.0909090909091, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1788504, Length=280, Percent_Identity=24.2857142857143, Blast_Score=90, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34928; Mature: 34928

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLETLLKRLLQSIVVLWIMSVLTFCAVNLIGDPVHLLVSPTATEQEIAEARHSLGLDLPV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCCHHHHHHHHHHCCCCCCH
QQQYLHFVQGALHGDLGDSFIYNRPAIELIVSRIPATLELAVTALLLSLAIGIPMGIFAG
HHHHHHHHHHHHHCCCCCCHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
LKPASRLSRLLMACSLGGVIMPTFWIGMIGILVFSVNLGWLPSGGRGPISTVLGMPLSVT
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCEEC
SWEGIRFLLLPALTLSLFKISLVARLTEAGTREVAGQEYIKFARAKGVGGARLVLRHVVP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
NVLIPIVTVVGLEFGHLIAFSVVTESVFSWPGMGKLIIDSVLALDRPVVVAYLLVTLVLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
VVLNLIVDLLYVLLDPRLRHKAA
HHHHHHHHHHHHHHCCHHHHCCC
>Mature Secondary Structure
MLETLLKRLLQSIVVLWIMSVLTFCAVNLIGDPVHLLVSPTATEQEIAEARHSLGLDLPV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCCHHHHHHHHHHCCCCCCH
QQQYLHFVQGALHGDLGDSFIYNRPAIELIVSRIPATLELAVTALLLSLAIGIPMGIFAG
HHHHHHHHHHHHHCCCCCCHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
LKPASRLSRLLMACSLGGVIMPTFWIGMIGILVFSVNLGWLPSGGRGPISTVLGMPLSVT
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCEEC
SWEGIRFLLLPALTLSLFKISLVARLTEAGTREVAGQEYIKFARAKGVGGARLVLRHVVP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
NVLIPIVTVVGLEFGHLIAFSVVTESVFSWPGMGKLIIDSVLALDRPVVVAYLLVTLVLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
VVLNLIVDLLYVLLDPRLRHKAA
HHHHHHHHHHHHHHCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800; 8550458 [H]