| Definition | Ralstonia eutropha JMP134 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007347 |
| Length | 3,806,533 |
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The map label for this gene is mrkC [H]
Identifier: 73540541
GI number: 73540541
Start: 905398
End: 907956
Strand: Reverse
Name: mrkC [H]
Synonym: Reut_A0838
Alternate gene names: 73540541
Gene position: 907956-905398 (Counterclockwise)
Preceding gene: 73540542
Following gene: 73540540
Centisome position: 23.85
GC content: 65.46
Gene sequence:
>2559_bases ATGCAAAAAAGAACAGCGCACGCTATTCCGCCCAGCCTGCGGCCGCTCAGTGCCGTAGTCATGATGCTCGTCAGTGCCGG CGCGCTCGGTGCAAACCCCGATCCACGCCCGGCGCCTTCGTCCGCCGAAGTGGAATTCAATGACCTGTTCCTGCACCAGC CCGGCGGAAGCGCAGTCGATTTCAGCCGCTTCAACACGGGCAATGTCGTGCTGCCTGGCAACTACCGCGCGGAGCTTTAC GTCAACCAGGCATGGCTCGGGCGGATGGAAGTCCGCATGGGCGAGACGGCGGGCAAGGATAGTCCGGTACTGCCTTGCTT CGATGAGCCACTGCTTGTTCGGATCGGCGCGGATGCCAACAAGCTCACGCCGGAAGCGACGGCATCCGTGCAAGATCGCG ACGCTTGCGTGCCGCTGCATGCCATCATCGCTGGTGCCACCGCGAGCTTCGACAGCAGCGAACAACGGCTCGATGTCAGC GTGCCACAGGCCGCGCTGACGCGGCAGGCGCGCGGGTATGTGGATCCTCGGTACTGGAGCGACGGCGTAACCGCGGCGAC GCTCCAGTACAACGGCAGCGTCTATCAGTCGCGCGCGGAAGCCCGTACGGCCACGCAAGGCTATCTGGGCCTCAATGCGG GCTTCAATGCCGGCCCCTGGCGCTTCCGACACAAGGGCAGCCTCGGCGTCGATCAGGGCAACGCGCGGTACCAGAGCATA CAGACCAGCTTGCAGCGCTCGGTCGTTGCGCTGCGCAGCCAACTGGTGCTCGGCGATGCTTTCACCGACGGTACCGTCTT CGACAGCGTCGGCTTCCGTGGCGTCCAGCTCGCGAGCGACGACCGCATGCAACCGGAATCACAGCGCGGCTATGCACCGA GCGTGCGCGGCATCGCCAACAGCAACGCGCGCGTACAGGTCCGCCAAAACGGCAACCTGATCTACGAAACCACGGTCGCG GCCGGCCCGTTCGAGATCGACGACCTCTATCCGACCGGCTATGGCGGCGACCTGGAAGTCGTGGTGACCGAAGCCGACGG CAGCGTGCATGTTTCGCGTGTCCCTTATGCGGCCGCTGTCAATGCCTTGCGTCCCGGCGTCACACGCTATGGCATCACCG CAGGCCAATACCGCAATGCGGGCCTGCATGACCGTCCTGCCATGCTCCAGGCCACCGTACAGCACGGCTTCACCAATATG GTGACCGGCTACGGTGGTGTCGTGGTGGCAGAAGGCTACCTCGCCGCAGCGGCTGGCGCCGCGCTCAACACGGTCTATGG TGCGTTCGGTGCTGACCTGACCCATGCGGGCACGCGCCTCACCACGCAGCCGGACCGTCATGGCTTCAGCATGCGAATCA GCTACAGCAAGCTCGTGGAGCCCACCGGCACCAACGTATCCGTCGCGGCCTATCGCTATTCGAGCAGCGGTTACCTCAGC TTTGCCGATGCGATGACCCTGCGCGAACTCGAGCACGGCGCCATGCAATCGACGATGCGCGGCATCCCGCGCAGCCAGCT CCAGCTCACCCTGAATCAACGCCTGCAGCCCGGCTACGGGTCCCTGTATCTGTCCGGGTCAGTACACGGCTACTGGAACC GCAGAGGCACCGACACGCAGTTCCAGCTCGGCTACAACAACAGCTACAAGTCGCTGAACTATGGCGTTGCGGCATCGCGC CAGTTCAGCGTGTCGAGCGGTCGCTGGGAAAGCCGCGTTATGCTCAATATCGGCATCCCGCTGGGCAAGGCCCGGCATGC GCCGTATGCCATGACCGGCATCGAGCGCGATTCGTCCGGAGCGGTGAGCCTGCAGCAGTCAATGACTGGCTCGCTCGGCG CCGACAACGCCTTCAGCTACGGCGTGAATGCCGGCTATGCCGGCGGTAGCGGCCGCCATGCTGCAAGCCTCGCGGGTAAT GCGTCTTATCTGTCTCCCGTGGCTACGCTGACGGCAACTGCTGGCAAGGGCAGCAACTATTCGCAAGTGTCCGCGGGCAT CTCGGGCGGCGTCGTGGCCTATGCCGGCGGCGTGGGCTTCACGCCGACGATGGGCGAGACGCTTGCCATCGTCGAAGCCG CCGACGCTGGCGGAGCCCGGCTCGCCAACGGGAGCGGGCTGCGTATCGATCGCTGGGGCCACGCGGTGGTGCCCGGACTG GTGCCGTTCTCGCGCAACCAGATCGAGATCGATCCGAAGGGCCTGCCGATGAACGTGGAGCTGGACTCCACGCTCCAGCA GGTTGCCCCGACCGCAGGCGCCGTGGTGGCGGTCCGGTTCGCGACCGCGGATCGCGGACGGCCTGCGGTCATCCGCACCA GCACGGCCGATGGCAAGTCGATTCCATTCGGCGCCGAAGTACAGGATGCTCACGGCAACAACATTGGCACCGTTGGACAA GGCAGCCGCATCGTTGCGCGCGGCCTGCGGGCCGAACGTGGCCAGTTGACCGTGCGGTGGGGCAAGACGGCGCAAGACAG CTGCCGACTCGACTATGTGCTGCCCGCCGCAGCGCGGCGCGATACGCGCATTGAGGTCATCGAGGCGCAGTGCCATTGA
Upstream 100 bases:
>100_bases GGCACATGCCGGCCTCACTGAAATTCCCCTGATTCGCGCTGACGCATGCCGCTGGACGGCAGGGACGCGTGTTACCCCAA TTTCCAGCGCAATACATGCC
Downstream 100 bases:
>100_bases ACTGGCCCGCCGTTTCACCAAGAAATTGTCCATGGCACCGCGGCGGCAGGTGGCTACACTGTGAAGCTACCGCGCCTCCG GATGCCGTCATGACCACCTA
Product: fimbrial biogenesis outer membrane usher protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 852; Mature: 852
Protein sequence:
>852_residues MQKRTAHAIPPSLRPLSAVVMMLVSAGALGANPDPRPAPSSAEVEFNDLFLHQPGGSAVDFSRFNTGNVVLPGNYRAELY VNQAWLGRMEVRMGETAGKDSPVLPCFDEPLLVRIGADANKLTPEATASVQDRDACVPLHAIIAGATASFDSSEQRLDVS VPQAALTRQARGYVDPRYWSDGVTAATLQYNGSVYQSRAEARTATQGYLGLNAGFNAGPWRFRHKGSLGVDQGNARYQSI QTSLQRSVVALRSQLVLGDAFTDGTVFDSVGFRGVQLASDDRMQPESQRGYAPSVRGIANSNARVQVRQNGNLIYETTVA AGPFEIDDLYPTGYGGDLEVVVTEADGSVHVSRVPYAAAVNALRPGVTRYGITAGQYRNAGLHDRPAMLQATVQHGFTNM VTGYGGVVVAEGYLAAAAGAALNTVYGAFGADLTHAGTRLTTQPDRHGFSMRISYSKLVEPTGTNVSVAAYRYSSSGYLS FADAMTLRELEHGAMQSTMRGIPRSQLQLTLNQRLQPGYGSLYLSGSVHGYWNRRGTDTQFQLGYNNSYKSLNYGVAASR QFSVSSGRWESRVMLNIGIPLGKARHAPYAMTGIERDSSGAVSLQQSMTGSLGADNAFSYGVNAGYAGGSGRHAASLAGN ASYLSPVATLTATAGKGSNYSQVSAGISGGVVAYAGGVGFTPTMGETLAIVEAADAGGARLANGSGLRIDRWGHAVVPGL VPFSRNQIEIDPKGLPMNVELDSTLQQVAPTAGAVVAVRFATADRGRPAVIRTSTADGKSIPFGAEVQDAHGNNIGTVGQ GSRIVARGLRAERGQLTVRWGKTAQDSCRLDYVLPAAARRDTRIEVIEAQCH
Sequences:
>Translated_852_residues MQKRTAHAIPPSLRPLSAVVMMLVSAGALGANPDPRPAPSSAEVEFNDLFLHQPGGSAVDFSRFNTGNVVLPGNYRAELY VNQAWLGRMEVRMGETAGKDSPVLPCFDEPLLVRIGADANKLTPEATASVQDRDACVPLHAIIAGATASFDSSEQRLDVS VPQAALTRQARGYVDPRYWSDGVTAATLQYNGSVYQSRAEARTATQGYLGLNAGFNAGPWRFRHKGSLGVDQGNARYQSI QTSLQRSVVALRSQLVLGDAFTDGTVFDSVGFRGVQLASDDRMQPESQRGYAPSVRGIANSNARVQVRQNGNLIYETTVA AGPFEIDDLYPTGYGGDLEVVVTEADGSVHVSRVPYAAAVNALRPGVTRYGITAGQYRNAGLHDRPAMLQATVQHGFTNM VTGYGGVVVAEGYLAAAAGAALNTVYGAFGADLTHAGTRLTTQPDRHGFSMRISYSKLVEPTGTNVSVAAYRYSSSGYLS FADAMTLRELEHGAMQSTMRGIPRSQLQLTLNQRLQPGYGSLYLSGSVHGYWNRRGTDTQFQLGYNNSYKSLNYGVAASR QFSVSSGRWESRVMLNIGIPLGKARHAPYAMTGIERDSSGAVSLQQSMTGSLGADNAFSYGVNAGYAGGSGRHAASLAGN ASYLSPVATLTATAGKGSNYSQVSAGISGGVVAYAGGVGFTPTMGETLAIVEAADAGGARLANGSGLRIDRWGHAVVPGL VPFSRNQIEIDPKGLPMNVELDSTLQQVAPTAGAVVAVRFATADRGRPAVIRTSTADGKSIPFGAEVQDAHGNNIGTVGQ GSRIVARGLRAERGQLTVRWGKTAQDSCRLDYVLPAAARRDTRIEVIEAQCH >Mature_852_residues MQKRTAHAIPPSLRPLSAVVMMLVSAGALGANPDPRPAPSSAEVEFNDLFLHQPGGSAVDFSRFNTGNVVLPGNYRAELY VNQAWLGRMEVRMGETAGKDSPVLPCFDEPLLVRIGADANKLTPEATASVQDRDACVPLHAIIAGATASFDSSEQRLDVS VPQAALTRQARGYVDPRYWSDGVTAATLQYNGSVYQSRAEARTATQGYLGLNAGFNAGPWRFRHKGSLGVDQGNARYQSI QTSLQRSVVALRSQLVLGDAFTDGTVFDSVGFRGVQLASDDRMQPESQRGYAPSVRGIANSNARVQVRQNGNLIYETTVA AGPFEIDDLYPTGYGGDLEVVVTEADGSVHVSRVPYAAAVNALRPGVTRYGITAGQYRNAGLHDRPAMLQATVQHGFTNM VTGYGGVVVAEGYLAAAAGAALNTVYGAFGADLTHAGTRLTTQPDRHGFSMRISYSKLVEPTGTNVSVAAYRYSSSGYLS FADAMTLRELEHGAMQSTMRGIPRSQLQLTLNQRLQPGYGSLYLSGSVHGYWNRRGTDTQFQLGYNNSYKSLNYGVAASR QFSVSSGRWESRVMLNIGIPLGKARHAPYAMTGIERDSSGAVSLQQSMTGSLGADNAFSYGVNAGYAGGSGRHAASLAGN ASYLSPVATLTATAGKGSNYSQVSAGISGGVVAYAGGVGFTPTMGETLAIVEAADAGGARLANGSGLRIDRWGHAVVPGL VPFSRNQIEIDPKGLPMNVELDSTLQQVAPTAGAVVAVRFATADRGRPAVIRTSTADGKSIPFGAEVQDAHGNNIGTVGQ GSRIVARGLRAERGQLTVRWGKTAQDSCRLDYVLPAAARRDTRIEVIEAQCH
Specific function: Involved in the export and assembly of the type 3 fimbrial subunit (mrkA) [H]
COG id: COG3188
COG function: function code NU; P pilus assembly protein, porin PapC
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1786332, Length=838, Percent_Identity=35.799522673031, Blast_Score=484, Evalue=1e-138, Organism=Escherichia coli, GI1790772, Length=898, Percent_Identity=33.4075723830735, Blast_Score=468, Evalue=1e-132, Organism=Escherichia coli, GI1789533, Length=842, Percent_Identity=34.5605700712589, Blast_Score=450, Evalue=1e-127, Organism=Escherichia coli, GI1787172, Length=850, Percent_Identity=33.7647058823529, Blast_Score=417, Evalue=1e-117, Organism=Escherichia coli, GI1786744, Length=850, Percent_Identity=32.9411764705882, Blast_Score=416, Evalue=1e-117, Organism=Escherichia coli, GI1788427, Length=759, Percent_Identity=33.7285902503294, Blast_Score=400, Evalue=1e-112, Organism=Escherichia coli, GI87081778, Length=837, Percent_Identity=27.7180406212664, Blast_Score=249, Evalue=6e-67, Organism=Escherichia coli, GI1789610, Length=803, Percent_Identity=26.1519302615193, Blast_Score=176, Evalue=5e-45,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 90108; Mature: 90108
Theoretical pI: Translated: 9.17; Mature: 9.17
Prosite motif: PS01151 FIMBRIAL_USHER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKRTAHAIPPSLRPLSAVVMMLVSAGALGANPDPRPAPSSAEVEFNDLFLHQPGGSAVD CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEE FSRFNTGNVVLPGNYRAELYVNQAWLGRMEVRMGETAGKDSPVLPCFDEPLLVRIGADAN EEECCCCCEEECCCCEEEEEEEHHHCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCC KLTPEATASVQDRDACVPLHAIIAGATASFDSSEQRLDVSVPQAALTRQARGYVDPRYWS CCCCCHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCC DGVTAATLQYNGSVYQSRAEARTATQGYLGLNAGFNAGPWRFRHKGSLGVDQGNARYQSI CCCEEEEEEECCCHHHHHHHHHHHCCCEEEECCCCCCCCEEEEECCCCCCCCCCHHHHHH QTSLQRSVVALRSQLVLGDAFTDGTVFDSVGFRGVQLASDDRMQPESQRGYAPSVRGIAN HHHHHHHHHHHHHHEEEECCCCCCEEECCCCCCEEEECCCCCCCCHHHCCCCCCCCCCCC SNARVQVRQNGNLIYETTVAAGPFEIDDLYPTGYGGDLEVVVTEADGSVHVSRVPYAAAV CCCEEEEEECCCEEEEEEECCCCEECCCCCCCCCCCCEEEEEEECCCCEEEECCCHHHHH NALRPGVTRYGITAGQYRNAGLHDRPAMLQATVQHGFTNMVTGYGGVVVAEGYLAAAAGA HHHCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHCCCCCEEEECCHHHHHHHH ALNTVYGAFGADLTHAGTRLTTQPDRHGFSMRISYSKLVEPTGTNVSVAAYRYSSSGYLS HHHHHHHHCCCCHHCCCCEECCCCCCCCEEEEEEHHHHCCCCCCCEEEEEEEECCCCCEE FADAMTLRELEHGAMQSTMRGIPRSQLQLTLNQRLQPGYGSLYLSGSVHGYWNRRGTDTQ HHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEHHCCCCCCCEEEEECCEEEEECCCCCCCE FQLGYNNSYKSLNYGVAASRQFSVSSGRWESRVMLNIGIPLGKARHAPYAMTGIERDSSG EEECCCCCCCCEECCEECCEEEECCCCCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCC AVSLQQSMTGSLGADNAFSYGVNAGYAGGSGRHAASLAGNASYLSPVATLTATAGKGSNY CEEEHHHCCCCCCCCCCEECCCCCCCCCCCCCEEEEECCCCHHHCCHHEEEEECCCCCCC SQVSAGISGGVVAYAGGVGFTPTMGETLAIVEAADAGGARLANGSGLRIDRWGHAVVPGL HHHHCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCEECCCCCEEEECCCCEECCCC VPFSRNQIEIDPKGLPMNVELDSTLQQVAPTAGAVVAVRFATADRGRPAVIRTSTADGKS CCCCCCEEEECCCCCEEEEEHHHHHHHHCCCCCEEEEEEEEECCCCCCEEEEECCCCCCC IPFGAEVQDAHGNNIGTVGQGSRIVARGLRAERGQLTVRWGKTAQDSCRLDYVLPAAARR CCCCCEEECCCCCCCCCCCCCCHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCC DTRIEVIEAQCH CCEEEEEEECCC >Mature Secondary Structure MQKRTAHAIPPSLRPLSAVVMMLVSAGALGANPDPRPAPSSAEVEFNDLFLHQPGGSAVD CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEE FSRFNTGNVVLPGNYRAELYVNQAWLGRMEVRMGETAGKDSPVLPCFDEPLLVRIGADAN EEECCCCCEEECCCCEEEEEEEHHHCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCC KLTPEATASVQDRDACVPLHAIIAGATASFDSSEQRLDVSVPQAALTRQARGYVDPRYWS CCCCCHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCC DGVTAATLQYNGSVYQSRAEARTATQGYLGLNAGFNAGPWRFRHKGSLGVDQGNARYQSI CCCEEEEEEECCCHHHHHHHHHHHCCCEEEECCCCCCCCEEEEECCCCCCCCCCHHHHHH QTSLQRSVVALRSQLVLGDAFTDGTVFDSVGFRGVQLASDDRMQPESQRGYAPSVRGIAN HHHHHHHHHHHHHHEEEECCCCCCEEECCCCCCEEEECCCCCCCCHHHCCCCCCCCCCCC SNARVQVRQNGNLIYETTVAAGPFEIDDLYPTGYGGDLEVVVTEADGSVHVSRVPYAAAV CCCEEEEEECCCEEEEEEECCCCEECCCCCCCCCCCCEEEEEEECCCCEEEECCCHHHHH NALRPGVTRYGITAGQYRNAGLHDRPAMLQATVQHGFTNMVTGYGGVVVAEGYLAAAAGA HHHCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHCCCCCEEEECCHHHHHHHH ALNTVYGAFGADLTHAGTRLTTQPDRHGFSMRISYSKLVEPTGTNVSVAAYRYSSSGYLS HHHHHHHHCCCCHHCCCCEECCCCCCCCEEEEEEHHHHCCCCCCCEEEEEEEECCCCCEE FADAMTLRELEHGAMQSTMRGIPRSQLQLTLNQRLQPGYGSLYLSGSVHGYWNRRGTDTQ HHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEHHCCCCCCCEEEEECCEEEEECCCCCCCE FQLGYNNSYKSLNYGVAASRQFSVSSGRWESRVMLNIGIPLGKARHAPYAMTGIERDSSG EEECCCCCCCCEECCEECCEEEECCCCCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCC AVSLQQSMTGSLGADNAFSYGVNAGYAGGSGRHAASLAGNASYLSPVATLTATAGKGSNY CEEEHHHCCCCCCCCCCEECCCCCCCCCCCCCEEEEECCCCHHHCCHHEEEEECCCCCCC SQVSAGISGGVVAYAGGVGFTPTMGETLAIVEAADAGGARLANGSGLRIDRWGHAVVPGL HHHHCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCEECCCCCEEEECCCCEECCCC VPFSRNQIEIDPKGLPMNVELDSTLQQVAPTAGAVVAVRFATADRGRPAVIRTSTADGKS CCCCCCEEEECCCCCEEEEEHHHHHHHHCCCCCEEEEEEEEECCCCCCEEEEECCCCCCC IPFGAEVQDAHGNNIGTVGQGSRIVARGLRAERGQLTVRWGKTAQDSCRLDYVLPAAARR CCCCCEEECCCCCCCCCCCCCCHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCC DTRIEVIEAQCH CCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1670938 [H]