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The map label for this gene is ybgF [C]

Identifier: 73540501

GI number: 73540501

Start: 866583

End: 867341

Strand: Direct

Name: ybgF [C]

Synonym: Reut_A0797

Alternate gene names: 73540501

Gene position: 866583-867341 (Clockwise)

Preceding gene: 73540500

Following gene: 73540502

Centisome position: 22.77

GC content: 63.77

Gene sequence:

>759_bases
ATGAAAGCACGCGTTTCCACCCTGTTGTGGCTTGCCGCCGTTTCCGGTGCAGCCATGCTGCCCCTTGCTCCGGCCCGTGC
CGGCGTGTTCGATGATGACGAGGCGCGCCGCGCCGTGATCACCCTGCGCGACCAGTTCAACGGTTTCCAGGCGACCGCGA
CGCAGCGCATCGAGCAGAACAGCCGCACGACGATCGACATCCAGAACCAGCTGGAAGGCCTTCGCCAGGAGGTCGCCCGG
CTGCGCGGCCAGAACGAGGTGCTGCAGAACACGGTGGAAACGCTGCAAAAGCAGCAGAAGGACTACTACGCGGACCTCGA
TGCGCGCCTGAAGAAATTCGAGCCGCAGCAGGTCACCGTGGAAGGCCGCGAGGGCACGGTCCAGCCCAATGAAAAGCCCG
AGTACGACGCCGCGCTCAAGCAGTTCCAGGCCGGCGACTTCAAGAGCTCCGGCAATTCGTTTGCGGCGTTCGTCAAGAAG
TATCCGCAGAGCCCGTACCTGCCGCTCGCGCAGTATTGGCTTGGAAATGCTCTTTACGCGCAACGCGACTACAAGGGCTC
GACCACCGTGCTGCAGAACATGCTGCAGGCGAACCCGACGCACCCGAAGGCGCCCGATGCCATGATCGCCATCGCCAACA
ACCAGCTGGAGTCCGGCCAGAAGGCTGCGGCGCGCAAGACGCTGGAGCAGGTGGTGGCCAAGTATCCGGGTACCGAAGGC
GCGCAGGCCGCAAGCAACCGGCTCAAGACGCTGAAGTAA

Upstream 100 bases:

>100_bases
GCAAGGAAAAGCCGAAGTCGACGGGCCACGACGAAGCCGCCTGGGCCGAGAACCGCCGCGCCGACATCAACTACTGATCT
GATCCGCGTACAGGCCATCC

Downstream 100 bases:

>100_bases
GCCGGTACGGCACCAGATTGACTGCAAAGCCCGCGTTCAGCGGGCTTTTTTCCGTCTCGCGCTAAAATACGCGATTCGCC
TGCAATTTTCGCGTGCCGCC

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MKARVSTLLWLAAVSGAAMLPLAPARAGVFDDDEARRAVITLRDQFNGFQATATQRIEQNSRTTIDIQNQLEGLRQEVAR
LRGQNEVLQNTVETLQKQQKDYYADLDARLKKFEPQQVTVEGREGTVQPNEKPEYDAALKQFQAGDFKSSGNSFAAFVKK
YPQSPYLPLAQYWLGNALYAQRDYKGSTTVLQNMLQANPTHPKAPDAMIAIANNQLESGQKAAARKTLEQVVAKYPGTEG
AQAASNRLKTLK

Sequences:

>Translated_252_residues
MKARVSTLLWLAAVSGAAMLPLAPARAGVFDDDEARRAVITLRDQFNGFQATATQRIEQNSRTTIDIQNQLEGLRQEVAR
LRGQNEVLQNTVETLQKQQKDYYADLDARLKKFEPQQVTVEGREGTVQPNEKPEYDAALKQFQAGDFKSSGNSFAAFVKK
YPQSPYLPLAQYWLGNALYAQRDYKGSTTVLQNMLQANPTHPKAPDAMIAIANNQLESGQKAAARKTLEQVVAKYPGTEG
AQAASNRLKTLK
>Mature_252_residues
MKARVSTLLWLAAVSGAAMLPLAPARAGVFDDDEARRAVITLRDQFNGFQATATQRIEQNSRTTIDIQNQLEGLRQEVAR
LRGQNEVLQNTVETLQKQQKDYYADLDARLKKFEPQQVTVEGREGTVQPNEKPEYDAALKQFQAGDFKSSGNSFAAFVKK
YPQSPYLPLAQYWLGNALYAQRDYKGSTTVLQNMLQANPTHPKAPDAMIAIANNQLESGQKAAARKTLEQVVAKYPGTEG
AQAASNRLKTLK

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybgF [H]

Homologues:

Organism=Escherichia coli, GI1786963, Length=99, Percent_Identity=37.3737373737374, Blast_Score=76, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27947; Mature: 27947

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKARVSTLLWLAAVSGAAMLPLAPARAGVFDDDEARRAVITLRDQFNGFQATATQRIEQN
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHEEHHHHCCCHHHHHHHHHHHC
SRTTIDIQNQLEGLRQEVARLRGQNEVLQNTVETLQKQQKDYYADLDARLKKFEPQQVTV
CCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
EGREGTVQPNEKPEYDAALKQFQAGDFKSSGNSFAAFVKKYPQSPYLPLAQYWLGNALYA
ECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHCCHHHH
QRDYKGSTTVLQNMLQANPTHPKAPDAMIAIANNQLESGQKAAARKTLEQVVAKYPGTEG
HCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHCHHHHHHHHHHHHHHHHCCCCCC
AQAASNRLKTLK
HHHHHHHHHCCC
>Mature Secondary Structure
MKARVSTLLWLAAVSGAAMLPLAPARAGVFDDDEARRAVITLRDQFNGFQATATQRIEQN
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHEEHHHHCCCHHHHHHHHHHHC
SRTTIDIQNQLEGLRQEVARLRGQNEVLQNTVETLQKQQKDYYADLDARLKKFEPQQVTV
CCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
EGREGTVQPNEKPEYDAALKQFQAGDFKSSGNSFAAFVKKYPQSPYLPLAQYWLGNALYA
ECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHCCHHHH
QRDYKGSTTVLQNMLQANPTHPKAPDAMIAIANNQLESGQKAAARKTLEQVVAKYPGTEG
HCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHCHHHHHHHHHHHHHHHHCCCCCC
AQAASNRLKTLK
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12534463 [H]