BacMap

Definition	Dechloromonas aromatica RCB, complete genome.
Accession	NC_007298
Length	4,501,104

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The map label for this gene is cbpA [H]

Identifier: 71907692

GI number: 71907692

Start: 2222801

End: 2223748

Strand: Reverse

Name: cbpA [H]

Synonym: Daro_2065

Alternate gene names: 71907692

Gene position: 2223748-2222801 (Counterclockwise)

Preceding gene: 71907699

Following gene: 71907691

Centisome position: 49.4

GC content: 62.45

Gene sequence:

>948_bases
ATGGAATTCAAGGACTATTACAAGATCATGGGGGTGGCGCGGGATGCGACCCAGGACGAGATCAAGCGCGCCTATCGCCA
GCTGGCCCGCAAATATCACCCCGATGTCAGCAAGGACCCCGAGGCCGAGATTCGGTTCAAGGAACTCGGCGAAGCCTACG
CGGTGCTCAAGGATCTGGAAAAGCGCGCCGCCTACGACCGGCTGGGTGCCAACTGGCAGGCCGGGCAGGATTTTCGGCCG
CCACCCGATTGGAACGCCGGTTTCGAGTTTTCGGGCGATGGCGCGAACGGCAGGGGCGCCGAGGATTTCAGCGACTTTTT
CGAATCCTTGTATGGCCGTGGTTTTGCCGGTGCCGGCCGGGGCCAGCGGGAGTTCCATGCCCGCGGCGAGGACCGTCACG
CCCAGATCATGATCGATCTGGCCGACGCCTATAGTGGCGCCACCCGGGTCATCACGCTCGGCACGCCCGAGGTGGATGCC
AACGGCCGGGTGACGATGCGTTCACATCAGCTCAACGTGACCATACCGCGCGGTGTTCGCGCCGGTCAGCACATTCGTCT
GACCGGGCAGGGCGCACCCGGTATCGGTCAGGGCAAGGCAGGCGATCTTTATCTGGAAGTCGCATTCAATCCCCATGCCC
ATTTCCGGGTCGAGCAGCGCGATGTCTTTCTCGACCTGCCGCTGGCGCCATGGGAAGCGGCCCTAGGGGCAACGGTCAGC
GTACCGACGCCGGATGCCACGGTCGACCTGAAAATTCCGCCCAATTCGAAATCCGGCGGCAAGCTGCGACTGAAAGGCCG
CGGTATCCCGGGCAATACACCCGGCGATTTCTATGTCGTGTTGCAGGTGGTCTTGCCGGTGGCGGAAAGCGAGGCCGACA
AGGCCTTCTACGCCAGTATGGCCGAGCAGTTCAAATCATTCAAACCGCGGTCTAGACTGGGAGCGTAA

Upstream 100 bases:

>100_bases
GGATGAGAAAGATGGGTCCAAGGAAAGACTGGTGATGCCGCAGCTCGGCGAATTCACCGTTGCGCACGTCGAGCCACCCG
GTCCTGAGTAAAGCCTCGCC

Downstream 100 bases:

>100_bases
GCATGGACAAAGACAAGATGCTGCCGCAACCGAGCGCGATCATTCTTGAAGAGCAAACCGACCTGACGCTGAGTGACGTC
AGTCAGGCCTGCGCCGTGCG

Product: heat shock protein DnaJ, N-terminal:chaperone DnaJ, C-terminal

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MEFKDYYKIMGVARDATQDEIKRAYRQLARKYHPDVSKDPEAEIRFKELGEAYAVLKDLEKRAAYDRLGANWQAGQDFRP
PPDWNAGFEFSGDGANGRGAEDFSDFFESLYGRGFAGAGRGQREFHARGEDRHAQIMIDLADAYSGATRVITLGTPEVDA
NGRVTMRSHQLNVTIPRGVRAGQHIRLTGQGAPGIGQGKAGDLYLEVAFNPHAHFRVEQRDVFLDLPLAPWEAALGATVS
VPTPDATVDLKIPPNSKSGGKLRLKGRGIPGNTPGDFYVVLQVVLPVAESEADKAFYASMAEQFKSFKPRSRLGA

Sequences:

>Translated_315_residues
MEFKDYYKIMGVARDATQDEIKRAYRQLARKYHPDVSKDPEAEIRFKELGEAYAVLKDLEKRAAYDRLGANWQAGQDFRP
PPDWNAGFEFSGDGANGRGAEDFSDFFESLYGRGFAGAGRGQREFHARGEDRHAQIMIDLADAYSGATRVITLGTPEVDA
NGRVTMRSHQLNVTIPRGVRAGQHIRLTGQGAPGIGQGKAGDLYLEVAFNPHAHFRVEQRDVFLDLPLAPWEAALGATVS
VPTPDATVDLKIPPNSKSGGKLRLKGRGIPGNTPGDFYVVLQVVLPVAESEADKAFYASMAEQFKSFKPRSRLGA
>Mature_315_residues
MEFKDYYKIMGVARDATQDEIKRAYRQLARKYHPDVSKDPEAEIRFKELGEAYAVLKDLEKRAAYDRLGANWQAGQDFRP
PPDWNAGFEFSGDGANGRGAEDFSDFFESLYGRGFAGAGRGQREFHARGEDRHAQIMIDLADAYSGATRVITLGTPEVDA
NGRVTMRSHQLNVTIPRGVRAGQHIRLTGQGAPGIGQGKAGDLYLEVAFNPHAHFRVEQRDVFLDLPLAPWEAALGATVS
VPTPDATVDLKIPPNSKSGGKLRLKGRGIPGNTPGDFYVVLQVVLPVAESEADKAFYASMAEQFKSFKPRSRLGA

Specific function: DNA-binding protein that preferentially recognizes a curved DNA sequence. It is probably a functional analog of DnaJ; displays overlapping activities with DnaJ, but functions under different conditions, probably acting as a molecular chaperone in an adapt

COG id: COG2214

COG function: function code O; DnaJ-class molecular chaperone

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 J domain [H]

Homologues:

Organism=Homo sapiens, GI56549115, Length=331, Percent_Identity=31.1178247734139, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI201862587, Length=331, Percent_Identity=31.1178247734139, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI201862518, Length=331, Percent_Identity=31.1178247734139, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI205360838, Length=349, Percent_Identity=27.2206303724928, Blast_Score=108, Evalue=5e-24,
Organism=Homo sapiens, GI205360840, Length=349, Percent_Identity=27.2206303724928, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI6631085, Length=329, Percent_Identity=27.9635258358663, Blast_Score=108, Evalue=7e-24,
Organism=Homo sapiens, GI5453690, Length=323, Percent_Identity=28.7925696594427, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI39204547, Length=303, Percent_Identity=28.7128712871287, Blast_Score=102, Evalue=5e-22,
Organism=Homo sapiens, GI7706495, Length=317, Percent_Identity=27.4447949526814, Blast_Score=95, Evalue=9e-20,
Organism=Homo sapiens, GI4504511, Length=304, Percent_Identity=28.6184210526316, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI194306642, Length=117, Percent_Identity=41.025641025641, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI194306640, Length=117, Percent_Identity=41.025641025641, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI9558755, Length=66, Percent_Identity=50, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI72534740, Length=117, Percent_Identity=40.1709401709402, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI56687498, Length=65, Percent_Identity=49.2307692307692, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI194328758, Length=148, Percent_Identity=35.8108108108108, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI194328760, Length=148, Percent_Identity=35.8108108108108, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI23503241, Length=74, Percent_Identity=48.6486486486487, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI45504382, Length=65, Percent_Identity=49.2307692307692, Blast_Score=72, Evalue=9e-13,
Organism=Homo sapiens, GI22749377, Length=66, Percent_Identity=50, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI4885495, Length=67, Percent_Identity=52.2388059701493, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI47777312, Length=69, Percent_Identity=53.6231884057971, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI17388799, Length=67, Percent_Identity=52.2388059701493, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI29126218, Length=65, Percent_Identity=46.1538461538462, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI21553335, Length=70, Percent_Identity=48.5714285714286, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI88501736, Length=66, Percent_Identity=51.5151515151515, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI27151736, Length=66, Percent_Identity=51.5151515151515, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI5031741, Length=63, Percent_Identity=52.3809523809524, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI217035105, Length=93, Percent_Identity=37.6344086021505, Blast_Score=65, Evalue=1e-10,
Organism=Escherichia coli, GI1787235, Length=316, Percent_Identity=42.4050632911392, Blast_Score=229, Evalue=1e-61,
Organism=Escherichia coli, GI1786197, Length=365, Percent_Identity=33.1506849315069, Blast_Score=162, Evalue=2e-41,
Organism=Caenorhabditis elegans, GI17534355, Length=321, Percent_Identity=29.9065420560748, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17553096, Length=331, Percent_Identity=29.0030211480363, Blast_Score=101, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI17553098, Length=331, Percent_Identity=29.0030211480363, Blast_Score=101, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI212645553, Length=342, Percent_Identity=27.1929824561404, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17538236, Length=117, Percent_Identity=41.025641025641, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI115532476, Length=67, Percent_Identity=49.2537313432836, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17568643, Length=65, Percent_Identity=49.2307692307692, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17507263, Length=62, Percent_Identity=46.7741935483871, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6323870, Length=69, Percent_Identity=53.6231884057971, Blast_Score=76, Evalue=9e-15,
Organism=Saccharomyces cerevisiae, GI6323813, Length=109, Percent_Identity=42.2018348623853, Blast_Score=70, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6323119, Length=100, Percent_Identity=43, Blast_Score=70, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6324265, Length=148, Percent_Identity=35.8108108108108, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI19920464, Length=325, Percent_Identity=26.4615384615385, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI85726398, Length=353, Percent_Identity=28.6118980169972, Blast_Score=107, Evalue=8e-24,
Organism=Drosophila melanogaster, GI24658562, Length=318, Percent_Identity=29.874213836478, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24658555, Length=318, Percent_Identity=29.874213836478, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI45549272, Length=360, Percent_Identity=27.2222222222222, Blast_Score=101, Evalue=6e-22,
Organism=Drosophila melanogaster, GI45552811, Length=360, Percent_Identity=27.2222222222222, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24646562, Length=287, Percent_Identity=29.9651567944251, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24646560, Length=287, Percent_Identity=29.9651567944251, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24646558, Length=287, Percent_Identity=29.9651567944251, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24646556, Length=287, Percent_Identity=29.9651567944251, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI21357547, Length=287, Percent_Identity=29.9651567944251, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI45552813, Length=355, Percent_Identity=27.3239436619718, Blast_Score=88, Evalue=9e-18,
Organism=Drosophila melanogaster, GI18858081, Length=279, Percent_Identity=28.673835125448, Blast_Score=86, Evalue=5e-17,
Organism=Drosophila melanogaster, GI17648033, Length=101, Percent_Identity=43.5643564356436, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24584630, Length=101, Percent_Identity=43.5643564356436, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24654066, Length=69, Percent_Identity=55.0724637681159, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24654070, Length=69, Percent_Identity=55.0724637681159, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24654068, Length=69, Percent_Identity=55.0724637681159, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24654072, Length=69, Percent_Identity=55.0724637681159, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI161077138, Length=64, Percent_Identity=57.8125, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24668492, Length=66, Percent_Identity=48.4848484848485, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21358273, Length=68, Percent_Identity=52.9411764705882, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI20129487, Length=69, Percent_Identity=50.7246376811594, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24584014, Length=69, Percent_Identity=50.7246376811594, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24641698, Length=63, Percent_Identity=46.031746031746, Blast_Score=68, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24641696, Length=63, Percent_Identity=46.031746031746, Blast_Score=68, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002939
- InterPro:   IPR001623
- InterPro:   IPR018253
- InterPro:   IPR008971
- InterPro:   IPR015609
- InterPro:   IPR003095 [H]

Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C [H]

EC number: NA

Molecular weight: Translated: 34628; Mature: 34628

Theoretical pI: Translated: 7.91; Mature: 7.91

Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFKDYYKIMGVARDATQDEIKRAYRQLARKYHPDVSKDPEAEIRFKELGEAYAVLKDLE
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHH
KRAAYDRLGANWQAGQDFRPPPDWNAGFEFSGDGANGRGAEDFSDFFESLYGRGFAGAGR
HHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
GQREFHARGEDRHAQIMIDLADAYSGATRVITLGTPEVDANGRVTMRSHQLNVTIPRGVR
CCHHHHCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCC
AGQHIRLTGQGAPGIGQGKAGDLYLEVAFNPHAHFRVEQRDVFLDLPLAPWEAALGATVS
CCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEEECCEEEEECCCCCHHHHHCCEEE
VPTPDATVDLKIPPNSKSGGKLRLKGRGIPGNTPGDFYVVLQVVLPVAESEADKAFYASM
CCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
AEQFKSFKPRSRLGA
HHHHHHCCCHHHCCC
>Mature Secondary Structure
MEFKDYYKIMGVARDATQDEIKRAYRQLARKYHPDVSKDPEAEIRFKELGEAYAVLKDLE
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHH
KRAAYDRLGANWQAGQDFRPPPDWNAGFEFSGDGANGRGAEDFSDFFESLYGRGFAGAGR
HHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
GQREFHARGEDRHAQIMIDLADAYSGATRVITLGTPEVDANGRVTMRSHQLNVTIPRGVR
CCHHHHCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCC
AGQHIRLTGQGAPGIGQGKAGDLYLEVAFNPHAHFRVEQRDVFLDLPLAPWEAALGATVS
CCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEEECCEEEEECCCCCHHHHHCCEEE
VPTPDATVDLKIPPNSKSGGKLRLKGRGIPGNTPGDFYVVLQVVLPVAESEADKAFYASM
CCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
AEQFKSFKPRSRLGA
HHHHHHCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA