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The map label for this gene is tnpR [H]

Identifier: 71906946

GI number: 71906946

Start: 1426631

End: 1427194

Strand: Reverse

Name: tnpR [H]

Synonym: Daro_1312

Alternate gene names: 71906946

Gene position: 1427194-1426631 (Counterclockwise)

Preceding gene: 71906953

Following gene: 71906945

Centisome position: 31.71

GC content: 57.27

Gene sequence:

>564_bases
ATGTCAGGTCAAAACGTCGGCTACCTCAGAGTAAGCACCCTCGTCCAGAACACGGCGCGTCAGCTTGAAGGCGTAACGCT
GGATGAAGTCTTCGAGGACAAGGCCAGTGGCAAGGACACATCCCGCCCCCAACTTGAGGCTTGCCTGAAACATCTCCGCA
AGGGGGACACCCTGCACATCCATAGCCTTGATCGGCTAGGGCGCAACCTGGACGACCTCCGTAAGATCATCAAGGAACTG
ACGGGGCGTGGCGTCGTTGTGAAGTCGCACAAGGAAAACCTGACCTTCACCGGCGACGACTCGCCAATGGCTAACCTGCT
TCTGTCCATGCTGGGAGCGGTAGCCGAGTTCGAGCGTTCCATCATCCTTGAGCGACAGCGTGAAGGGATCGCCATTGCCA
AGGCCGCAGGTGCTTACAAAGGCGGCAAGAAGAAGATGACCGAGGAACAAGCCCAAGAGATTCGACGCAGGGTAGCCAAT
GGCGACAAGAAAGCAGCCGTCGCGCGTGACTTCGGCATCAGCCGGGAAACACTGTACCAATACCTGAACCGTTCAATCGA
CTAG

Upstream 100 bases:

>100_bases
CAGAATATGTGTCCAATCTAAGTTGTTTAAAAATCAACTTGACACTATCTATACAGCTTCTTAGACTTTGTCCTGACACA
TCATTCAACAGGAGAGCATC

Downstream 100 bases:

>100_bases
CTGCTCCTTTCATTCAAGAAAATGTGTATTGACACGGTTTTGCGTTTAGCGCAAAGTGTTGTTACACGGTTAAGTGTTTT
TGAGGCGAGATGAAAAATCG

Product: resolvase, N-terminal:resolvase helix-turn-helix region

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MSGQNVGYLRVSTLVQNTARQLEGVTLDEVFEDKASGKDTSRPQLEACLKHLRKGDTLHIHSLDRLGRNLDDLRKIIKEL
TGRGVVVKSHKENLTFTGDDSPMANLLLSMLGAVAEFERSIILERQREGIAIAKAAGAYKGGKKKMTEEQAQEIRRRVAN
GDKKAAVARDFGISRETLYQYLNRSID

Sequences:

>Translated_187_residues
MSGQNVGYLRVSTLVQNTARQLEGVTLDEVFEDKASGKDTSRPQLEACLKHLRKGDTLHIHSLDRLGRNLDDLRKIIKEL
TGRGVVVKSHKENLTFTGDDSPMANLLLSMLGAVAEFERSIILERQREGIAIAKAAGAYKGGKKKMTEEQAQEIRRRVAN
GDKKAAVARDFGISRETLYQYLNRSID
>Mature_186_residues
SGQNVGYLRVSTLVQNTARQLEGVTLDEVFEDKASGKDTSRPQLEACLKHLRKGDTLHIHSLDRLGRNLDDLRKIIKELT
GRGVVVKSHKENLTFTGDDSPMANLLLSMLGAVAEFERSIILERQREGIAIAKAAGAYKGGKKKMTEEQAQEIRRRVANG
DKKAAVARDFGISRETLYQYLNRSID

Specific function: Resolvase catalyzes the resolution (a site-specific recombination) of the cointegrated replicon to yield the final transposition products [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

Organism=Escherichia coli, GI1787404, Length=180, Percent_Identity=38.3333333333333, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1787827, Length=186, Percent_Identity=36.0215053763441, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1787638, Length=183, Percent_Identity=36.0655737704918, Blast_Score=101, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 20838; Mature: 20707

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: PS00397 RECOMBINASES_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGQNVGYLRVSTLVQNTARQLEGVTLDEVFEDKASGKDTSRPQLEACLKHLRKGDTLHI
CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEE
HSLDRLGRNLDDLRKIIKELTGRGVVVKSHKENLTFTGDDSPMANLLLSMLGAVAEFERS
ECHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCEECCCCCHHHHHHHHHHHHHHHHHHH
IILERQREGIAIAKAAGAYKGGKKKMTEEQAQEIRRRVANGDKKAAVARDFGISRETLYQ
HHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHH
YLNRSID
HHHHCCC
>Mature Secondary Structure 
SGQNVGYLRVSTLVQNTARQLEGVTLDEVFEDKASGKDTSRPQLEACLKHLRKGDTLHI
CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEE
HSLDRLGRNLDDLRKIIKELTGRGVVVKSHKENLTFTGDDSPMANLLLSMLGAVAEFERS
ECHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCEECCCCCHHHHHHHHHHHHHHHHHHH
IILERQREGIAIAKAAGAYKGGKKKMTEEQAQEIRRRVANGDKKAAVARDFGISRETLYQ
HHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHH
YLNRSID
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2992807; 6312271; 3029727 [H]