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The map label for this gene is exbD [H]

Identifier: 71906753

GI number: 71906753

Start: 1217329

End: 1217754

Strand: Reverse

Name: exbD [H]

Synonym: Daro_1114

Alternate gene names: 71906753

Gene position: 1217754-1217329 (Counterclockwise)

Preceding gene: 71906754

Following gene: 71906752

Centisome position: 27.05

GC content: 60.09

Gene sequence:

>426_bases
ATGGCCATTGGTAGCTTCAGTTCGCAAAATCACCAGATGCCGACCGCCGAAATCAACATGACGCCGCTGGTGGACGTGAT
GTTGGTACTACTGATCATCTTCATGATCACCGCACCGCTGATGACGCATTCGGTCAAGGTCGAACTGCCGCGTGCCTCCA
GCACGCCGACGCCGGAAAAGCCGATGACGCTGCAGGTCTCGATCAATGCCGAAAACACGGTTTTTGTCGGCACGCAGGCG
GTCGACCGCAACAGCCTCGAAGCCAGGTTCGGCGAAGCGGTGGCCCAGGATGCCAATGTCGAAATGCACTTGAAAGCCGA
CCGCGCCACCCGGTACGAAGCCGTCGCCGAAACGATGAGTGCCGCCCGCCGCGCCGGGCTGACCAAGATCGGCTTCGTCA
CGCAACCGGGAAGCGACAAGCCTTAA

Upstream 100 bases:

>100_bases
CACGATCTGCACGCCTTCTTCACGGTCGGCAAGCCATTTGTCGCCAACAGTGCGCAGATTCACCCGATGCGCGCCCGCGC
CGCCACGGAGGCTGCATAAC

Downstream 100 bases:

>100_bases
CCCTTTTTTCCTTTATTCAAATTTAACCATCCTCAAGCCAGCCAGCCCGACGCCAGCCAGCTATTTCGGATAGCCCACCG
CGTTGTGGTCAGCGAGCCAG

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MAIGSFSSQNHQMPTAEINMTPLVDVMLVLLIIFMITAPLMTHSVKVELPRASSTPTPEKPMTLQVSINAENTVFVGTQA
VDRNSLEARFGEAVAQDANVEMHLKADRATRYEAVAETMSAARRAGLTKIGFVTQPGSDKP

Sequences:

>Translated_141_residues
MAIGSFSSQNHQMPTAEINMTPLVDVMLVLLIIFMITAPLMTHSVKVELPRASSTPTPEKPMTLQVSINAENTVFVGTQA
VDRNSLEARFGEAVAQDANVEMHLKADRATRYEAVAETMSAARRAGLTKIGFVTQPGSDKP
>Mature_140_residues
AIGSFSSQNHQMPTAEINMTPLVDVMLVLLIIFMITAPLMTHSVKVELPRASSTPTPEKPMTLQVSINAENTVFVGTQAV
DRNSLEARFGEAVAQDANVEMHLKADRATRYEAVAETMSAARRAGLTKIGFVTQPGSDKP

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=121, Percent_Identity=40.495867768595, Blast_Score=93, Evalue=8e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15257; Mature: 15126

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.4 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIGSFSSQNHQMPTAEINMTPLVDVMLVLLIIFMITAPLMTHSVKVELPRASSTPTPEK
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCC
PMTLQVSINAENTVFVGTQAVDRNSLEARFGEAVAQDANVEMHLKADRATRYEAVAETMS
CEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHH
AARRAGLTKIGFVTQPGSDKP
HHHHCCCEEEEEEECCCCCCC
>Mature Secondary Structure 
AIGSFSSQNHQMPTAEINMTPLVDVMLVLLIIFMITAPLMTHSVKVELPRASSTPTPEK
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCC
PMTLQVSINAENTVFVGTQAVDRNSLEARFGEAVAQDANVEMHLKADRATRYEAVAETMS
CEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHH
AARRAGLTKIGFVTQPGSDKP
HHHHCCCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9140974 [H]