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The map label for this gene is yiaJ [C]

Identifier: 71906307

GI number: 71906307

Start: 736879

End: 737607

Strand: Reverse

Name: yiaJ [C]

Synonym: Daro_0668

Alternate gene names: 71906307

Gene position: 737607-736879 (Counterclockwise)

Preceding gene: 71906313

Following gene: 71906304

Centisome position: 16.39

GC content: 59.81

Gene sequence:

>729_bases
ATGATGTCGTTGCTCGACGCGCTCGCCGCGACGCCGGATGCAGCAAGTCTGAAACAACTGGCCCAGGCCACCGAACTTCA
TCCTTCGACAGCGCACCGCATTCTGGCAGCGATGTGCAATGCGCGCTTTGTCGAACGTCAAGATGCCGGCACTTATCGCC
TCGGTATCCGCCTGCTCGAACTGGGCGGCATCGTCAAATCACGGATCAACATGCGCGAGGTTGCTCTGCCCTTCATGCAG
GAACTGCATGAAAAAATCGGCGAAGCAATCAACCTTGGCACCCGTCACGACGACGATATCGTCTACCTCGAACGAACCTC
TTCGGGTCGCTCTTTGGTTCGCGTCGTCTATCTGGTCGGTGGCCGTGCGCCGCTACATCTGACCTCGCTCGGCAAGCTGT
TCTTGGCTGCCGAGAGTCCGCAAAAAGTGCGCGACTACGCCAAGCGCACCGGCCTGCCCGGTAAGACCCCACATTCGCTG
ACGACATTGACGGCACTTGAAAAAGAACTCGACAAGGTACGCCGGCATGGCGTTGCCTACGACGACGAAGAAGCCGAAAT
GGGCCTGAAGTGCGTGGCTGCCCCGATCTACGACCACGACGGCGAGGTGGTTGCGGCGCTTTCCGTTTCGGCCCCGGCCG
ACCGGCACGACCCCGACTGGGCTCGGCAGGTCAAGCAGACAGCCGACGCTGTCTCACAAACCCTCGGTTATACCGACCCC
AAAAAATAA

Upstream 100 bases:

>100_bases
TGGCTAATGCTACTCAAACCACACCAATAAAGGAATCCAGTTGTCTGAAGCAGCCAGCGGACCCAGCAAAGCACCGGGAT
CCATCCAGGTCATCGAGCGC

Downstream 100 bases:

>100_bases
AGGCCGCTCGCGGCGGCCTTTGAGTTTGCTACGTTCGAGCAATCAAGCCGGACGTCGCGACCCCATGCCGAGACCAGCAC
TTTCCATCCAGCGCTTGATC

Product: regulatory proteins, IclR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MMSLLDALAATPDAASLKQLAQATELHPSTAHRILAAMCNARFVERQDAGTYRLGIRLLELGGIVKSRINMREVALPFMQ
ELHEKIGEAINLGTRHDDDIVYLERTSSGRSLVRVVYLVGGRAPLHLTSLGKLFLAAESPQKVRDYAKRTGLPGKTPHSL
TTLTALEKELDKVRRHGVAYDDEEAEMGLKCVAAPIYDHDGEVVAALSVSAPADRHDPDWARQVKQTADAVSQTLGYTDP
KK

Sequences:

>Translated_242_residues
MMSLLDALAATPDAASLKQLAQATELHPSTAHRILAAMCNARFVERQDAGTYRLGIRLLELGGIVKSRINMREVALPFMQ
ELHEKIGEAINLGTRHDDDIVYLERTSSGRSLVRVVYLVGGRAPLHLTSLGKLFLAAESPQKVRDYAKRTGLPGKTPHSL
TTLTALEKELDKVRRHGVAYDDEEAEMGLKCVAAPIYDHDGEVVAALSVSAPADRHDPDWARQVKQTADAVSQTLGYTDP
KK
>Mature_242_residues
MMSLLDALAATPDAASLKQLAQATELHPSTAHRILAAMCNARFVERQDAGTYRLGIRLLELGGIVKSRINMREVALPFMQ
ELHEKIGEAINLGTRHDDDIVYLERTSSGRSLVRVVYLVGGRAPLHLTSLGKLFLAAESPQKVRDYAKRTGLPGKTPHSL
TTLTALEKELDKVRRHGVAYDDEEAEMGLKCVAAPIYDHDGEVVAALSVSAPADRHDPDWARQVKQTADAVSQTLGYTDP
KK

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1789999, Length=244, Percent_Identity=29.0983606557377, Blast_Score=127, Evalue=7e-31,
Organism=Escherichia coli, GI1786468, Length=242, Percent_Identity=29.3388429752066, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI87082359, Length=217, Percent_Identity=30.8755760368664, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1788131, Length=228, Percent_Identity=31.140350877193, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1786715, Length=241, Percent_Identity=31.5352697095436, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1790752, Length=233, Percent_Identity=29.1845493562232, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1788581, Length=216, Percent_Identity=26.8518518518519, Blast_Score=83, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 26502; Mature: 26502

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED ; PS00063 ALDOKETO_REDUCTASE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSLLDALAATPDAASLKQLAQATELHPSTAHRILAAMCNARFVERQDAGTYRLGIRLLE
CHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LGGIVKSRINMREVALPFMQELHEKIGEAINLGTRHDDDIVYLERTSSGRSLVRVVYLVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHC
GRAPLHLTSLGKLFLAAESPQKVRDYAKRTGLPGKTPHSLTTLTALEKELDKVRRHGVAY
CCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
DDEEAEMGLKCVAAPIYDHDGEVVAALSVSAPADRHDPDWARQVKQTADAVSQTLGYTDP
CCHHHHCCHHHEEECCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
KK
CC
>Mature Secondary Structure
MMSLLDALAATPDAASLKQLAQATELHPSTAHRILAAMCNARFVERQDAGTYRLGIRLLE
CHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LGGIVKSRINMREVALPFMQELHEKIGEAINLGTRHDDDIVYLERTSSGRSLVRVVYLVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHC
GRAPLHLTSLGKLFLAAESPQKVRDYAKRTGLPGKTPHSLTTLTALEKELDKVRRHGVAY
CCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
DDEEAEMGLKCVAAPIYDHDGEVVAALSVSAPADRHDPDWARQVKQTADAVSQTLGYTDP
CCHHHHCCHHHEEECCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
KK
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]