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The map label for this gene is rpfG [H]

Identifier: 71905829

GI number: 71905829

Start: 205055

End: 206260

Strand: Reverse

Name: rpfG [H]

Synonym: Daro_0187

Alternate gene names: 71905829

Gene position: 206260-205055 (Counterclockwise)

Preceding gene: 71905830

Following gene: 71905828

Centisome position: 4.58

GC content: 58.62

Gene sequence:

>1206_bases
ATGTTGAAGAAAATACCAGTCGAAAAACTGACGCTCGGCATGCACCTCCAGGCTTTCTGCGGCGCCTGGCTGGATCATCC
GTTCTGGCGGACCAAGTTCGTCCTGACCGACCCAAACGATCTGTGCCTGATCAAGGAAAGCTCGATCAGGGAAGTCTGGA
TCGACGCGTCCAAAGGTAGCGACGTAGCAACAGATGAGGTTGCCGGCACGACAGAAATCGTCACCGCAGAGGAAATTCCC
GAACCACCTCCCGTTGTGCAGGAAAAGGCTTCGTTCAACGACGAAGTCAAACGCGCCGCCAAGATTTGCGCCAAAGGCAA
GGAAGCCGTCGTTTCGATGTTCCAGGAAGCGCGCATGGGAAAGGCCATCGAGGCCGAAGCCGCCGCACCGCTGGTCGAGG
AAATTTCCAACTCCGTAATGCGCAATCCGGGTGCCCTGATCAGCCTGGCCCGCCTGAAGACGGCTGACGACTACACCTTC
ATGCATTCGGTGGCCGTCTGCGCCCTGATGATCGCCCTCGCCCGCCAGCTTGGCCTCGATGATCGACAGGTCCGCGATGC
CGGCATGGCCGGACTGCTGCACGACCTGGGCAAGGCGATGATTCCGCTTGAAGTGCTGAACAAGCCCAGCAAGCTGACCG
ACGAGGAATTCGACTTGGTCAAAACCCACCCTGAAGCGGGCTACAAGTTGCTGCTCGAGGGCAACGGCATCAGCGAAATG
ACCAAGGATGTCTGCCTGCACCACCATGAAAAAATCGATGGCAGCGGCTACCCGAAAGGACTGAACAGCGACACGATGAG
TCTGTTCGCCAAGATGGGGGCTGTCTGCGACGTTTACGACGCGGTCACCTCCAACCGTCCCTACAAGGCGGGCTGGGATC
CGGCTGAGTCGATCAAACGGATGGCGGAATGGAAGGGGCATTTCGACCCATCCGTCTTCCAGGCCTTCGTCAAGAGCCTG
GGCATCTACCCGATCGGCTCCTTCGTTCGCCTGGAGTCTGGCAAGCTCGGCGTGGTCATCGAACAAGGCGAGCAATCGCT
GCTCAAACCCAAGGTCAAAGTCTTTTTCTCGACCAAATCGCAAGCCTACATCCGCCCGGAAACCATCGATCTCGCCCGCA
GCCCCGAGAAAATTGCCGGCCGCGAAGATGCCGCCAAATGGGGCATCAAGGATGTCGACCGCTACTGGGCTGGCGACAAG
GCTTGA

Upstream 100 bases:

>100_bases
CGTGCCAACCTGCTGAAGAGTGACGCCGGCCTGTAAATCCTACATTTCTTCGCATTAAACAAGGGGGCGCGCAGCCCCCT
TTTTGTTAGAATTGCGAAAT

Downstream 100 bases:

>100_bases
AAACGCATTTATAATCCGTCACCTACCGAGGGGCGCTGCAGGAGATTCCTCCCAGGCTCGGTTTAAAACGGCGCTCACTG
ATCAACCCTGCCGGGCGCAG

Product: HDIG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MLKKIPVEKLTLGMHLQAFCGAWLDHPFWRTKFVLTDPNDLCLIKESSIREVWIDASKGSDVATDEVAGTTEIVTAEEIP
EPPPVVQEKASFNDEVKRAAKICAKGKEAVVSMFQEARMGKAIEAEAAAPLVEEISNSVMRNPGALISLARLKTADDYTF
MHSVAVCALMIALARQLGLDDRQVRDAGMAGLLHDLGKAMIPLEVLNKPSKLTDEEFDLVKTHPEAGYKLLLEGNGISEM
TKDVCLHHHEKIDGSGYPKGLNSDTMSLFAKMGAVCDVYDAVTSNRPYKAGWDPAESIKRMAEWKGHFDPSVFQAFVKSL
GIYPIGSFVRLESGKLGVVIEQGEQSLLKPKVKVFFSTKSQAYIRPETIDLARSPEKIAGREDAAKWGIKDVDRYWAGDK
A

Sequences:

>Translated_401_residues
MLKKIPVEKLTLGMHLQAFCGAWLDHPFWRTKFVLTDPNDLCLIKESSIREVWIDASKGSDVATDEVAGTTEIVTAEEIP
EPPPVVQEKASFNDEVKRAAKICAKGKEAVVSMFQEARMGKAIEAEAAAPLVEEISNSVMRNPGALISLARLKTADDYTF
MHSVAVCALMIALARQLGLDDRQVRDAGMAGLLHDLGKAMIPLEVLNKPSKLTDEEFDLVKTHPEAGYKLLLEGNGISEM
TKDVCLHHHEKIDGSGYPKGLNSDTMSLFAKMGAVCDVYDAVTSNRPYKAGWDPAESIKRMAEWKGHFDPSVFQAFVKSL
GIYPIGSFVRLESGKLGVVIEQGEQSLLKPKVKVFFSTKSQAYIRPETIDLARSPEKIAGREDAAKWGIKDVDRYWAGDK
A
>Mature_401_residues
MLKKIPVEKLTLGMHLQAFCGAWLDHPFWRTKFVLTDPNDLCLIKESSIREVWIDASKGSDVATDEVAGTTEIVTAEEIP
EPPPVVQEKASFNDEVKRAAKICAKGKEAVVSMFQEARMGKAIEAEAAAPLVEEISNSVMRNPGALISLARLKTADDYTF
MHSVAVCALMIALARQLGLDDRQVRDAGMAGLLHDLGKAMIPLEVLNKPSKLTDEEFDLVKTHPEAGYKLLLEGNGISEM
TKDVCLHHHEKIDGSGYPKGLNSDTMSLFAKMGAVCDVYDAVTSNRPYKAGWDPAESIKRMAEWKGHFDPSVFQAFVKSL
GIYPIGSFVRLESGKLGVVIEQGEQSLLKPKVKVFFSTKSQAYIRPETIDLARSPEKIAGREDAAKWGIKDVDRYWAGDK
A

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 44151; Mature: 44151

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKIPVEKLTLGMHLQAFCGAWLDHPFWRTKFVLTDPNDLCLIKESSIREVWIDASKGS
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCC
DVATDEVAGTTEIVTAEEIPEPPPVVQEKASFNDEVKRAAKICAKGKEAVVSMFQEARMG
CCCHHHCCCCEEEEEHHHCCCCCCCHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHCC
KAIEAEAAAPLVEEISNSVMRNPGALISLARLKTADDYTFMHSVAVCALMIALARQLGLD
CHHHHHHHHHHHHHHHHHHHCCCCHHEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC
DRQVRDAGMAGLLHDLGKAMIPLEVLNKPSKLTDEEFDLVKTHPEAGYKLLLEGNGISEM
HHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHCCCCCCCEEEEECCCHHHH
TKDVCLHHHEKIDGSGYPKGLNSDTMSLFAKMGAVCDVYDAVTSNRPYKAGWDPAESIKR
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHH
MAEWKGHFDPSVFQAFVKSLGIYPIGSFVRLESGKLGVVIEQGEQSLLKPKVKVFFSTKS
HHHHCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEECCCHHHHCCCEEEEEECCC
QAYIRPETIDLARSPEKIAGREDAAKWGIKDVDRYWAGDKA
CCEECCCHHHHCCCCHHHCCCHHHHHCCHHHHHHHHCCCCC
>Mature Secondary Structure
MLKKIPVEKLTLGMHLQAFCGAWLDHPFWRTKFVLTDPNDLCLIKESSIREVWIDASKGS
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCC
DVATDEVAGTTEIVTAEEIPEPPPVVQEKASFNDEVKRAAKICAKGKEAVVSMFQEARMG
CCCHHHCCCCEEEEEHHHCCCCCCCHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHCC
KAIEAEAAAPLVEEISNSVMRNPGALISLARLKTADDYTFMHSVAVCALMIALARQLGLD
CHHHHHHHHHHHHHHHHHHHCCCCHHEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC
DRQVRDAGMAGLLHDLGKAMIPLEVLNKPSKLTDEEFDLVKTHPEAGYKLLLEGNGISEM
HHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHCCCCCCCEEEEECCCHHHH
TKDVCLHHHEKIDGSGYPKGLNSDTMSLFAKMGAVCDVYDAVTSNRPYKAGWDPAESIKR
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHH
MAEWKGHFDPSVFQAFVKSLGIYPIGSFVRLESGKLGVVIEQGEQSLLKPKVKVFFSTKS
HHHHCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEECCCHHHHCCCEEEEEECCC
QAYIRPETIDLARSPEKIAGREDAAKWGIKDVDRYWAGDKA
CCEECCCHHHHCCCCHHHCCCHHHHHCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]