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The map label for this gene is rlpA [H]

Identifier: 71905753

GI number: 71905753

Start: 127389

End: 128390

Strand: Reverse

Name: rlpA [H]

Synonym: Daro_0111

Alternate gene names: 71905753

Gene position: 128390-127389 (Counterclockwise)

Preceding gene: 71905754

Following gene: 71905751

Centisome position: 2.85

GC content: 59.08

Gene sequence:

>1002_bases
ATGAGTCGTTTTGTCGCCCCGTTGAGTCTTGCGCTGCTGCTTGCCGCCTGTGGCGGCCCCAGTCCGATTCGCGACACAAC
GGTTGACGGGCAAAAAGGATCTGTTTCAAAGTCGCCGACGCCGACCAGGAAGCCGACAGCCGTCCTCAAACGGGGTGGTG
GTTTCTACAAGGATGACGGCCCGGCGGAAGACATTCCGGACGGCCTCGATGACATTCCCGACGCCGAACCGAAGTGGGAA
CCACTGCACAAGCCGGCGACCAAGCCCTATGTCGTGCTTGGCAAGGAATATGTTCCGAACACCACCGTCAAGCCCTACAA
GGCACGCGGTATCGCCAGCTGGTATGGCAAGAAGTTCCATGGCCAGAAAACCTCGATCGGCGAACCTTATGACATGTTCG
CGATGACCGCCGCCCACCCCTCGCTGGCCCTGCCGTCCTACGTGCGGGTAACCAGCGTACAGAGCGGCAAATCAGTGGTC
GTCCGCATTACCGACCGCGGCCCTTTTCATGCCGACCGTGTCATCGACCTTTCCTACACTGCCGCCTACAAACTTGGATT
GATCAACGGCGGCAGCGGCCAGGTCGAAGTCGAAGCGATTATTCCAGGCGACCTGGCCGGCACGACCTATGCCCAGACCA
CATCACCGCCCCGCGTCACCAGTACCACGAACGGGGACGATATCGAACAGCTGGCCAAACGCATGGCGCTCGAAGAACGG
CCGGTCCAAACCGCAGTAATGGCTGGCATGAGTGGCGATACGGGCATACAAAAAGGGATTTATCTGCAGCTTGGCGCCTT
CTCAAATGTCGAGAACGCCGAAAATCTGAAAAATCACCTGCTGCGCGAACTCGACTGGCTGACCGAAACGATGCGCGTCA
ATCCAGGCAGCGGCATACATCGCCTGCATCTCGGCCCTTATGCCAACCGCGGTGACGCTGACCGGGTGGCCGAAAAAATC
AGCGCCGTACTAGGCTTCCGACCAACCGTCATTACCCGTTAA

Upstream 100 bases:

>100_bases
CGCTGCCCTTCATGAGCTACGGTGGCACGGCTTTGGTTACACTCTTCCTTGGCATTGGGATTCTGATGTCGATCCATACC
CACCGGATGCTGGTCAAGAA

Downstream 100 bases:

>100_bases
ACGTCAGCAATTGACCTTGGCAACGACGATGTTGCCGCGCCCCTGGTAGTCGAGCGCCGAGAAACTCATCATCTTGGCCA
TGGCAATACCTCGACCGTTC

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MSRFVAPLSLALLLAACGGPSPIRDTTVDGQKGSVSKSPTPTRKPTAVLKRGGGFYKDDGPAEDIPDGLDDIPDAEPKWE
PLHKPATKPYVVLGKEYVPNTTVKPYKARGIASWYGKKFHGQKTSIGEPYDMFAMTAAHPSLALPSYVRVTSVQSGKSVV
VRITDRGPFHADRVIDLSYTAAYKLGLINGGSGQVEVEAIIPGDLAGTTYAQTTSPPRVTSTTNGDDIEQLAKRMALEER
PVQTAVMAGMSGDTGIQKGIYLQLGAFSNVENAENLKNHLLRELDWLTETMRVNPGSGIHRLHLGPYANRGDADRVAEKI
SAVLGFRPTVITR

Sequences:

>Translated_333_residues
MSRFVAPLSLALLLAACGGPSPIRDTTVDGQKGSVSKSPTPTRKPTAVLKRGGGFYKDDGPAEDIPDGLDDIPDAEPKWE
PLHKPATKPYVVLGKEYVPNTTVKPYKARGIASWYGKKFHGQKTSIGEPYDMFAMTAAHPSLALPSYVRVTSVQSGKSVV
VRITDRGPFHADRVIDLSYTAAYKLGLINGGSGQVEVEAIIPGDLAGTTYAQTTSPPRVTSTTNGDDIEQLAKRMALEER
PVQTAVMAGMSGDTGIQKGIYLQLGAFSNVENAENLKNHLLRELDWLTETMRVNPGSGIHRLHLGPYANRGDADRVAEKI
SAVLGFRPTVITR
>Mature_332_residues
SRFVAPLSLALLLAACGGPSPIRDTTVDGQKGSVSKSPTPTRKPTAVLKRGGGFYKDDGPAEDIPDGLDDIPDAEPKWEP
LHKPATKPYVVLGKEYVPNTTVKPYKARGIASWYGKKFHGQKTSIGEPYDMFAMTAAHPSLALPSYVRVTSVQSGKSVVV
RITDRGPFHADRVIDLSYTAAYKLGLINGGSGQVEVEAIIPGDLAGTTYAQTTSPPRVTSTTNGDDIEQLAKRMALEERP
VQTAVMAGMSGDTGIQKGIYLQLGAFSNVENAENLKNHLLRELDWLTETMRVNPGSGIHRLHLGPYANRGDADRVAEKIS
AVLGFRPTVITR

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=147, Percent_Identity=38.7755102040816, Blast_Score=95, Evalue=8e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 35838; Mature: 35707

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRFVAPLSLALLLAACGGPSPIRDTTVDGQKGSVSKSPTPTRKPTAVLKRGGGFYKDDG
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCC
PAEDIPDGLDDIPDAEPKWEPLHKPATKPYVVLGKEYVPNTTVKPYKARGIASWYGKKFH
CHHHCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHCCHHHHHHHHHC
GQKTSIGEPYDMFAMTAAHPSLALPSYVRVTSVQSGKSVVVRITDRGPFHADRVIDLSYT
CCCCCCCCCHHHHEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCEEEEEEEE
AAYKLGLINGGSGQVEVEAIIPGDLAGTTYAQTTSPPRVTSTTNGDDIEQLAKRMALEER
EEEEEEEEECCCCCEEEEEECCCCCCCCEEECCCCCCCEECCCCCHHHHHHHHHHHHHHC
PVQTAVMAGMSGDTGIQKGIYLQLGAFSNVENAENLKNHLLRELDWLTETMRVNPGSGIH
CHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
RLHLGPYANRGDADRVAEKISAVLGFRPTVITR
EEEECCCCCCCCHHHHHHHHHHHHCCCCCEECC
>Mature Secondary Structure 
SRFVAPLSLALLLAACGGPSPIRDTTVDGQKGSVSKSPTPTRKPTAVLKRGGGFYKDDG
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCC
PAEDIPDGLDDIPDAEPKWEPLHKPATKPYVVLGKEYVPNTTVKPYKARGIASWYGKKFH
CHHHCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHCCHHHHHHHHHC
GQKTSIGEPYDMFAMTAAHPSLALPSYVRVTSVQSGKSVVVRITDRGPFHADRVIDLSYT
CCCCCCCCCHHHHEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCEEEEEEEE
AAYKLGLINGGSGQVEVEAIIPGDLAGTTYAQTTSPPRVTSTTNGDDIEQLAKRMALEER
EEEEEEEEECCCCCEEEEEECCCCCCCCEEECCCCCCCEECCCCCHHHHHHHHHHHHHHC
PVQTAVMAGMSGDTGIQKGIYLQLGAFSNVENAENLKNHLLRELDWLTETMRVNPGSGIH
CHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
RLHLGPYANRGDADRVAEKISAVLGFRPTVITR
EEEECCCCCCCCHHHHHHHHHHHHCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]