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The map label for this gene is yhbU [H]

Identifier: 71905751

GI number: 71905751

Start: 125273

End: 126280

Strand: Reverse

Name: yhbU [H]

Synonym: Daro_0109

Alternate gene names: 71905751

Gene position: 126280-125273 (Counterclockwise)

Preceding gene: 71905753

Following gene: 71905750

Centisome position: 2.81

GC content: 62.0

Gene sequence:

>1008_bases
ATGAGCTCCTTGCCCGATCTCGTTTGTCCGGCCGGCAGCCTGCCGGCACTCAAAGCCGCCGTCGATAACGGCGCCGACAC
TGTCTACCTCGGCTACAAAAACGACACCAATGCGCGCAACTTCGCTGGCCTGAACTTCGACACCAAGACCATGGCCGAAG
GCATACGCTACGCCCATGCCAAGGGTCGCGAAGTACTGATGGCGATCAACACCTTCCCGCAGACCGGCCGGGTCGCCGAT
TGGCACAAGGCCGTCGACGGTGCCGTTGACCAGGGCGTGGACGCCATCATCCTGGCCGACATCGGCCTGCTCGACTACGC
CCGCCAGCGCCATCCGCAACAGCGCCTGCATCTTTCCGTGCAGGGCTCGGCGACCAGCTACGAAGCGATCAACTTCTGCC
AGCGTGAATTCGGCATTCGTCGCGCCGTATTGCCGCGCGTGCTGACGCTGGCCCAGGTCGAACATGTGATCAAGAACACC
ACAGTCGAAATCGAAGTCTTCGGCTTCGGCAGCCTGTGCGTGATGAATGAAGGCCGCTGCTGGCTGTCTTCCTACGCCTG
CGGTGAATCCCCCAATACCGTCGGCGCCTGCTCGCCGGCCAAGTACGTCAAATGGGACAAGAAGCCGGGCACCATGGAAA
CCCGTCTCAACGGTGTCCTGATCGACCGTTTCGGCGACGACGAGCCAGCCGGCTACCCAACGCTGTGCAAAGGTCGCTTC
GACGTGCAGGGAGACACCTATTACGCGCTGGAAGAACCGACCAGCCTGAACGTGCTGGAAATACTGCCGGACATCATCAA
GATCGGGGTCAAGGCCATCAAGGTTGAAGGCCGGCAGCGTAGCCCGACTTATGTTGCACAAGTCACCCGTACGCTGCGTG
CCGCGCTCGATTCGCTCCGCGATGGCAGCGAACGCTTCCACGTAAAACCAGCCTGGCAGGCGGAGCTGTCCAAGGTTTCC
GAAGGCAGCCAGGCGACGCTCGGCGCCTACAGCCGGCCATGGCGCTAA

Upstream 100 bases:

>100_bases
AGGCCAATGTAGCCTGGCACGAGCGATGGCTTTGACTAGGATCAATGGCGTTCCTGCAACGCTGGCTATACTCCGGCACT
TGCTATTCAGGATGCCTCCC

Downstream 100 bases:

>100_bases
AGGACAAAGCAGCATGAAACTTTCGCTTGGCCCCCTGCTCTATTTCTGGCCCAAGGGCGAGGTCATGGAGTTCTACGCCG
AGATGGCTCAGAACCCCGCG

Product: peptidase U32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MSSLPDLVCPAGSLPALKAAVDNGADTVYLGYKNDTNARNFAGLNFDTKTMAEGIRYAHAKGREVLMAINTFPQTGRVAD
WHKAVDGAVDQGVDAIILADIGLLDYARQRHPQQRLHLSVQGSATSYEAINFCQREFGIRRAVLPRVLTLAQVEHVIKNT
TVEIEVFGFGSLCVMNEGRCWLSSYACGESPNTVGACSPAKYVKWDKKPGTMETRLNGVLIDRFGDDEPAGYPTLCKGRF
DVQGDTYYALEEPTSLNVLEILPDIIKIGVKAIKVEGRQRSPTYVAQVTRTLRAALDSLRDGSERFHVKPAWQAELSKVS
EGSQATLGAYSRPWR

Sequences:

>Translated_335_residues
MSSLPDLVCPAGSLPALKAAVDNGADTVYLGYKNDTNARNFAGLNFDTKTMAEGIRYAHAKGREVLMAINTFPQTGRVAD
WHKAVDGAVDQGVDAIILADIGLLDYARQRHPQQRLHLSVQGSATSYEAINFCQREFGIRRAVLPRVLTLAQVEHVIKNT
TVEIEVFGFGSLCVMNEGRCWLSSYACGESPNTVGACSPAKYVKWDKKPGTMETRLNGVLIDRFGDDEPAGYPTLCKGRF
DVQGDTYYALEEPTSLNVLEILPDIIKIGVKAIKVEGRQRSPTYVAQVTRTLRAALDSLRDGSERFHVKPAWQAELSKVS
EGSQATLGAYSRPWR
>Mature_334_residues
SSLPDLVCPAGSLPALKAAVDNGADTVYLGYKNDTNARNFAGLNFDTKTMAEGIRYAHAKGREVLMAINTFPQTGRVADW
HKAVDGAVDQGVDAIILADIGLLDYARQRHPQQRLHLSVQGSATSYEAINFCQREFGIRRAVLPRVLTLAQVEHVIKNTT
VEIEVFGFGSLCVMNEGRCWLSSYACGESPNTVGACSPAKYVKWDKKPGTMETRLNGVLIDRFGDDEPAGYPTLCKGRFD
VQGDTYYALEEPTSLNVLEILPDIIKIGVKAIKVEGRQRSPTYVAQVTRTLRAALDSLRDGSERFHVKPAWQAELSKVSE
GSQATLGAYSRPWR

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1789548, Length=330, Percent_Identity=55.1515151515151, Blast_Score=399, Evalue=1e-112,
Organism=Escherichia coli, GI1788397, Length=314, Percent_Identity=28.9808917197452, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI87081910, Length=297, Percent_Identity=27.2727272727273, Blast_Score=93, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 36784; Mature: 36653

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLPDLVCPAGSLPALKAAVDNGADTVYLGYKNDTNARNFAGLNFDTKTMAEGIRYAHA
CCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEECCCCCCCCEECCCCCHHHHHHHHHHHHC
KGREVLMAINTFPQTGRVADWHKAVDGAVDQGVDAIILADIGLLDYARQRHPQQRLHLSV
CCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCHHHEEEEE
QGSATSYEAINFCQREFGIRRAVLPRVLTLAQVEHVIKNTTVEIEVFGFGSLCVMNEGRC
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEECCCE
WLSSYACGESPNTVGACSPAKYVKWDKKPGTMETRLNGVLIDRFGDDEPAGYPTLCKGRF
EEECCCCCCCCCCCCCCCCHHHEEECCCCCCHHHEECEEEEECCCCCCCCCCCCEECCEE
DVQGDTYYALEEPTSLNVLEILPDIIKIGVKAIKVEGRQRSPTYVAQVTRTLRAALDSLR
ECCCCEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHC
DGSERFHVKPAWQAELSKVSEGSQATLGAYSRPWR
CCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SSLPDLVCPAGSLPALKAAVDNGADTVYLGYKNDTNARNFAGLNFDTKTMAEGIRYAHA
CCCCCCCCCCCCCCHHHHHHCCCCCEEEEEECCCCCCCCEECCCCCHHHHHHHHHHHHC
KGREVLMAINTFPQTGRVADWHKAVDGAVDQGVDAIILADIGLLDYARQRHPQQRLHLSV
CCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCHHHEEEEE
QGSATSYEAINFCQREFGIRRAVLPRVLTLAQVEHVIKNTTVEIEVFGFGSLCVMNEGRC
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEECCCE
WLSSYACGESPNTVGACSPAKYVKWDKKPGTMETRLNGVLIDRFGDDEPAGYPTLCKGRF
EEECCCCCCCCCCCCCCCCHHHEEECCCCCCHHHEECEEEEECCCCCCCCCCCCEECCEE
DVQGDTYYALEEPTSLNVLEILPDIIKIGVKAIKVEGRQRSPTYVAQVTRTLRAALDSLR
ECCCCEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHC
DGSERFHVKPAWQAELSKVSEGSQATLGAYSRPWR
CCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]